Fragaria vesca (fragaria_vesca)
Imported from atlas release summary for Fragaria vesca.
2688
Candidate Protein Records
2288
Pathway-Level Records
5546
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5546
Family-Level Calls
C4H
6.38%
C3'H/CYP98A
5.72%
BAHD
5.57%
IFS
4.09%
UGT
3.97%
4CL
3.79%
7DLGT
3.71%
UFGT
3.7%
Other Families
63.07%
More Families (96)
CYP76
193
3.48%
POD
182
3.28%
F3H
171
3.08%
NMT
170
3.07%
T3O
158
2.85%
F3'H/CYP75B
122
2.2%
DWF4/CYP90B1
121
2.18%
BR6OX2/CYP85A2
109
1.97%
STR
107
1.93%
CODM/T6ODM
102
1.84%
CAS
101
1.82%
CAD
100
1.8%
LAC
93
1.68%
SMT1/SMT2/SMT3
92
1.66%
H6H
80
1.44%
CYP90D1
72
1.3%
TPS
70
1.26%
7DLH
68
1.23%
CYP71
61
1.1%
GES
60
1.08%
GS
55
0.99%
IFR
52
0.94%
CSE
52
0.94%
TRI/TRII
50
0.9%
PMT
48
0.87%
HCT
48
0.87%
IO
45
0.81%
SGD
45
0.81%
TAT
45
0.81%
SLS
44
0.79%
T16H
39
0.7%
ANR
37
0.67%
BR6OX1/CYP85A1
37
0.67%
G8O/G8H
36
0.65%
CCoAOMT
28
0.5%
RAS
28
0.5%
F5H/CYP84A
27
0.49%
8HGO
26
0.47%
F3'5'H/CYP75A
26
0.47%
CCR
26
0.47%
PYKS
24
0.43%
COR
24
0.43%
SQE
23
0.41%
COMT
21
0.38%
NCS
20
0.36%
LAMT
20
0.36%
BBE
20
0.36%
FPPS
20
0.36%
FNS
18
0.32%
CPD/CYP90A1
16
0.29%
ROT3/CYP90C1
15
0.27%
MPO
14
0.25%
CPR
12
0.22%
DXS
12
0.22%
DFR
11
0.2%
CYP51G1
11
0.2%
16OMT
10
0.18%
AACT
10
0.18%
CMK/IspE
10
0.18%
CNMT
9
0.16%
ANS/LDOX
9
0.16%
GGPPS
9
0.16%
HPPR
8
0.14%
SQS/FDFT1
8
0.14%
TYDC_DDC
7
0.13%
ODC
7
0.13%
DET2
7
0.13%
HMGR
7
0.13%
IDI
7
0.13%
ISY
6
0.11%
CYP719
6
0.11%
CHS
6
0.11%
PAL
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
TDC
4
0.07%
CYP80B1
4
0.07%
DWF5
4
0.07%
MVK
4
0.07%
PMK
4
0.07%
MVD
4
0.07%
CHI
3
0.05%
SMO1/SMO2
3
0.05%
DXR
3
0.05%
ADC
2
0.04%
DWF7
2
0.04%
HDR/IspH
2
0.04%
HMGS
2
0.04%
XMT_MXMT_DXMT
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 660 | 20 | BAHD (253) | View species results |
| Alkaloid pathway | 518 | 22 | 7DLGT (106) | View species results |
| Phenylpropanoid pathway | 457 | 11 | POD (178) | View species results |
| Flavonoid pathway | 271 | 11 | UFGT (189) | View species results |
| Steroid pathway | 192 | 15 | CAS (84) | View species results |
| Rosmarinic acid pathway | 190 | 7 | C4H (75) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2108 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 385 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Fves06G0015270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Fves06G0015280.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Fves06G0016370.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Fves06G0016370.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Fves06G0024590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Fves06G0024640.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Fves06G0028360.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Fves07G0001960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Fves07G0001960.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Fves07G0005660.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Fves07G0005660.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Fves07G0022020.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| FvesFvbUn0002380.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| FvesFvbUn0002390.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Fves02G0018870.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Fves02G0026990.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Fves02G0026990.2 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Fves02G0026990.3 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Fves02G0026990.5 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Fves03G0011050.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Fves03G0011130.1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| Fves05G0020230.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |