PlantSME Plant secondary metabolism enzyme database

Funaria hygrometrica (funaria_hygrometrica)

Imported from atlas release summary for Funaria hygrometrica.

648
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.63% Terpenoid pathway 24.07% Alkaloid pathway 18.98% Flavonoid pathway 10.19% Rosmarinic acid pathway 10.19% Steroid pathway 6.94%
Family Distribution
POD 7.0% BAHD 6.44% 4CL 6.32% C4H 5.02% C3'H/CYP98A 4.52% NMT 4.27% CYP76 3.41% STR 3.34%
Other Families 59.69%
More Families (95)
IFS 44 2.72% PAL 42 2.6% F3H 39 2.41% IFR 37 2.29% PYKS 36 2.23% T3O 35 2.17% DWF4/CYP90B1 33 2.04% CODM/T6ODM 31 1.92% SMT1/SMT2/SMT3 30 1.86% BR6OX2/CYP85A2 29 1.8% F3'H/CYP75B 27 1.67% GS 25 1.55% CYP71 24 1.49% TRI/TRII 22 1.36% CSE 21 1.3% UFGT 19 1.18% SGD 18 1.11% 7DLGT 18 1.11% UGT 18 1.11% H6H 16 0.99% CHS 16 0.99% CAD 16 0.99% IO 13 0.8% HCT 13 0.8% LAC 13 0.8% RAS 13 0.8% TDC 12 0.74% CNMT 11 0.68% T16H 11 0.68% COMT 11 0.68% CAS 11 0.68% PMT 9 0.56% SLS 9 0.56% G8O/G8H 8 0.5% 8HGO 8 0.5% CPD/CYP90A1 8 0.5% SQS/FDFT1 8 0.5% CYP80B1 7 0.43% COR 7 0.43% CCR 7 0.43% CPR 7 0.43% GGPPS 7 0.43% 7DLH 6 0.37% MPO 6 0.37% DFR 6 0.37% F3'5'H/CYP75A 6 0.37% ANR 6 0.37% SMO1/SMO2 6 0.37% CYP90D1 6 0.37% TYDC_DDC 5 0.31% FNS 5 0.31% TAT 5 0.31% DET2 5 0.31% CYP51G1 5 0.31% MVK 5 0.31% IDI 5 0.31% AACT 5 0.31% BBE 4 0.25% NCS 4 0.25% LAMT 4 0.25% CHI 4 0.25% FLS 4 0.25% HDS/IspG 4 0.25% DXS 4 0.25% MCT/IspD 4 0.25% MVD 4 0.25% ADC 3 0.19% CYP719 3 0.19% ANS/LDOX 3 0.19% ROT3/CYP90C1 3 0.19% HMGR 3 0.19% FPPS 3 0.19% HDR/IspH 3 0.19% GES 2 0.12% 16OMT 2 0.12% F5H/CYP84A 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% SQE 2 0.12% DWF5 2 0.12% BR6OX1/CYP85A1 2 0.12% DWF1 2 0.12% HYD1 2 0.12% TPS 2 0.12% CMK/IspE 2 0.12% DXR 2 0.12% HMGS 2 0.12% ISY 1 0.06% 6OMT_4OMT_SOMT 1 0.06% ODC 1 0.06% FK 1 0.06% DWF7 1 0.06% CPI1 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 192 10 POD (107) View species results
Terpenoid pathway 156 19 BAHD (72) View species results
Alkaloid pathway 123 14 NMT (24) View species results
Flavonoid pathway 66 8 UFGT (16) View species results
Rosmarinic acid pathway 66 7 C4H (21) View species results
Steroid pathway 45 13 SMT1/SMT2/SMT3 (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 490 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 130 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
Reset
Gene Pathway Family Confidence Status Best Target
Fhygscaffold_130061490 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Fhygscaffold_140084890 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Fhygscaffold_180140410 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Fhygscaffold_190148480 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Fhygscaffold_190156630 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Fhygscaffold_20165250 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Fhygscaffold_80353020 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ