PlantSME Plant secondary metabolism enzyme database

Funaria hygrometrica (funaria_hygrometrica)

Imported from atlas release summary for Funaria hygrometrica.

648
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.63% Terpenoid pathway 24.07% Alkaloid pathway 18.98% Flavonoid pathway 10.19% Rosmarinic acid pathway 10.19% Steroid pathway 6.94%
Family Distribution
POD 7.0% BAHD 6.44% 4CL 6.32% C4H 5.02% C3'H/CYP98A 4.52% NMT 4.27% CYP76 3.41% STR 3.34%
Other Families 59.69%
More Families (95)
IFS 44 2.72% PAL 42 2.6% F3H 39 2.41% IFR 37 2.29% PYKS 36 2.23% T3O 35 2.17% DWF4/CYP90B1 33 2.04% CODM/T6ODM 31 1.92% SMT1/SMT2/SMT3 30 1.86% BR6OX2/CYP85A2 29 1.8% F3'H/CYP75B 27 1.67% GS 25 1.55% CYP71 24 1.49% TRI/TRII 22 1.36% CSE 21 1.3% UFGT 19 1.18% SGD 18 1.11% 7DLGT 18 1.11% UGT 18 1.11% H6H 16 0.99% CHS 16 0.99% CAD 16 0.99% IO 13 0.8% HCT 13 0.8% LAC 13 0.8% RAS 13 0.8% TDC 12 0.74% CNMT 11 0.68% T16H 11 0.68% COMT 11 0.68% CAS 11 0.68% PMT 9 0.56% SLS 9 0.56% G8O/G8H 8 0.5% 8HGO 8 0.5% CPD/CYP90A1 8 0.5% SQS/FDFT1 8 0.5% CYP80B1 7 0.43% COR 7 0.43% CCR 7 0.43% CPR 7 0.43% GGPPS 7 0.43% 7DLH 6 0.37% MPO 6 0.37% DFR 6 0.37% F3'5'H/CYP75A 6 0.37% ANR 6 0.37% SMO1/SMO2 6 0.37% CYP90D1 6 0.37% TYDC_DDC 5 0.31% FNS 5 0.31% TAT 5 0.31% DET2 5 0.31% CYP51G1 5 0.31% MVK 5 0.31% IDI 5 0.31% AACT 5 0.31% BBE 4 0.25% NCS 4 0.25% LAMT 4 0.25% CHI 4 0.25% FLS 4 0.25% HDS/IspG 4 0.25% DXS 4 0.25% MCT/IspD 4 0.25% MVD 4 0.25% ADC 3 0.19% CYP719 3 0.19% ANS/LDOX 3 0.19% ROT3/CYP90C1 3 0.19% HMGR 3 0.19% FPPS 3 0.19% HDR/IspH 3 0.19% GES 2 0.12% 16OMT 2 0.12% F5H/CYP84A 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% SQE 2 0.12% DWF5 2 0.12% BR6OX1/CYP85A1 2 0.12% DWF1 2 0.12% HYD1 2 0.12% TPS 2 0.12% CMK/IspE 2 0.12% DXR 2 0.12% HMGS 2 0.12% ISY 1 0.06% 6OMT_4OMT_SOMT 1 0.06% ODC 1 0.06% FK 1 0.06% DWF7 1 0.06% CPI1 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 192 10 POD (107) View species results
Terpenoid pathway 156 19 BAHD (72) View species results
Alkaloid pathway 123 14 NMT (24) View species results
Flavonoid pathway 66 8 UFGT (16) View species results
Rosmarinic acid pathway 66 7 C4H (21) View species results
Steroid pathway 45 13 SMT1/SMT2/SMT3 (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 490 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 130 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Fhygscaffold_70338490 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Fhygscaffold_70342270 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Fhygscaffold_70343010 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Fhygscaffold_70343120 Phenylpropanoid POD low borderline POD__00012__sp_Q10N21_APX1_ORYSJ
Fhygscaffold_70343130 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Fhygscaffold_70343500 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Fhygscaffold_80353190 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Fhygscaffold_90361550 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Fhygscaffold_90364390 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Fhygscaffold_90365110 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Fhygscaffold_90367110 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Fhygscaffold_90367410 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Fhygscaffold_90369220 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH