PlantSME Plant secondary metabolism enzyme database

Gackstroemia (gackstroemia)

Imported from atlas release summary for Gackstroemia.

640
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.06% Terpenoid pathway 22.66% Alkaloid pathway 20.78% Flavonoid pathway 11.56% Rosmarinic acid pathway 9.84% Steroid pathway 6.09%
Family Distribution
4CL 6.94% BAHD 5.78% POD 5.2% C3'H/CYP98A 5.09% C4H 4.8% STR 3.53% GS 3.29% IFS 3.18%
Other Families 62.2%
More Families (92)
CYP76 55 3.18% NMT 51 2.95% T3O 41 2.37% IFR 41 2.37% TRI/TRII 40 2.31% CAD 37 2.14% F3H 36 2.08% DWF4/CYP90B1 35 2.02% HCT 31 1.79% BR6OX2/CYP85A2 30 1.73% F3'H/CYP75B 28 1.62% UGT 27 1.56% UFGT 26 1.5% 7DLGT 25 1.45% H6H 24 1.39% RAS 23 1.33% LAC 19 1.1% TPS 19 1.1% PAL 18 1.04% CAS 17 0.98% IO 16 0.92% CODM/T6ODM 16 0.92% TAT 16 0.92% F3'5'H/CYP75A 15 0.87% COMT 15 0.87% T16H 14 0.81% CSE 14 0.81% SMT1/SMT2/SMT3 14 0.81% DFR 13 0.75% SLS 12 0.69% CCR 12 0.69% GGPPS 12 0.69% GES 11 0.64% G8O/G8H 11 0.64% COR 11 0.64% CYP90D1 11 0.64% 8HGO 10 0.58% CNMT 10 0.58% PYKS 10 0.58% SGD 10 0.58% CPD/CYP90A1 10 0.58% ANR 9 0.52% PMT 8 0.46% LAMT 8 0.46% CPR 8 0.46% HPPR 8 0.46% NCS 7 0.4% CHS 7 0.4% CCoAOMT 6 0.35% BR6OX1/CYP85A1 6 0.35% CYP51G1 6 0.35% CYP71 6 0.35% AACT 6 0.35% MPO 5 0.29% CYP719 5 0.29% FNS 5 0.29% CYP80B1 4 0.23% 6OMT_4OMT_SOMT 4 0.23% ANS/LDOX 4 0.23% SQE 4 0.23% SQS/FDFT1 4 0.23% MVK 4 0.23% 7DLH 3 0.17% 16OMT 3 0.17% ADC 3 0.17% CHI 3 0.17% DWF1 3 0.17% SMO1/SMO2 3 0.17% DWF5 3 0.17% DET2 3 0.17% HMGR 3 0.17% MVD 3 0.17% MCT/IspD 3 0.17% HDR/IspH 3 0.17% CMK/IspE 3 0.17% BBE 2 0.12% HYD1 2 0.12% CPI1 2 0.12% DWF7 2 0.12% IDI 2 0.12% DXS 2 0.12% FPPS 2 0.12% DXR 2 0.12% HDS/IspG 2 0.12% PMK 2 0.12% ODC 1 0.06% TYDC_DDC 1 0.06% TDC 1 0.06% F5H/CYP84A 1 0.06% FK 1 0.06% ROT3/CYP90C1 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 186 11 POD (86) View species results
Terpenoid pathway 145 19 BAHD (58) View species results
Alkaloid pathway 133 16 GS (25) View species results
Flavonoid pathway 74 10 UFGT (24) View species results
Rosmarinic acid pathway 63 7 C4H (19) View species results
Steroid pathway 39 11 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 536 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 154 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Gackstroemia3877050010140 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Gackstroemia5004010043580 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gackstroemia5335100049630 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Gackstroemia5995950114180 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Gackstroemia6014850118450 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gackstroemia6046380126950 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Gackstroemia6133740160540 Phenylpropanoid CCR medium pass CCR__00008__sp_Q9S9N9_CCR1_ARATH
Gackstroemia6138540162830 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Gackstroemia6153320170190 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Gackstroemia6228900204840 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gackstroemia6228900204850 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Gackstroemia6253570214390 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR