Gackstroemia (gackstroemia)
Imported from atlas release summary for Gackstroemia.
640
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
640
Candidate Genes
4CL
6.94%
BAHD
5.78%
POD
5.2%
C3'H/CYP98A
5.09%
C4H
4.8%
STR
3.53%
GS
3.29%
IFS
3.18%
Other Families
62.2%
More Families (92)
CYP76
55
3.18%
NMT
51
2.95%
T3O
41
2.37%
IFR
41
2.37%
TRI/TRII
40
2.31%
CAD
37
2.14%
F3H
36
2.08%
DWF4/CYP90B1
35
2.02%
HCT
31
1.79%
BR6OX2/CYP85A2
30
1.73%
F3'H/CYP75B
28
1.62%
UGT
27
1.56%
UFGT
26
1.5%
7DLGT
25
1.45%
H6H
24
1.39%
RAS
23
1.33%
LAC
19
1.1%
TPS
19
1.1%
PAL
18
1.04%
CAS
17
0.98%
IO
16
0.92%
CODM/T6ODM
16
0.92%
TAT
16
0.92%
F3'5'H/CYP75A
15
0.87%
COMT
15
0.87%
T16H
14
0.81%
CSE
14
0.81%
SMT1/SMT2/SMT3
14
0.81%
DFR
13
0.75%
SLS
12
0.69%
CCR
12
0.69%
GGPPS
12
0.69%
GES
11
0.64%
G8O/G8H
11
0.64%
COR
11
0.64%
CYP90D1
11
0.64%
8HGO
10
0.58%
CNMT
10
0.58%
PYKS
10
0.58%
SGD
10
0.58%
CPD/CYP90A1
10
0.58%
ANR
9
0.52%
PMT
8
0.46%
LAMT
8
0.46%
CPR
8
0.46%
HPPR
8
0.46%
NCS
7
0.4%
CHS
7
0.4%
CCoAOMT
6
0.35%
BR6OX1/CYP85A1
6
0.35%
CYP51G1
6
0.35%
CYP71
6
0.35%
AACT
6
0.35%
MPO
5
0.29%
CYP719
5
0.29%
FNS
5
0.29%
CYP80B1
4
0.23%
6OMT_4OMT_SOMT
4
0.23%
ANS/LDOX
4
0.23%
SQE
4
0.23%
SQS/FDFT1
4
0.23%
MVK
4
0.23%
7DLH
3
0.17%
16OMT
3
0.17%
ADC
3
0.17%
CHI
3
0.17%
DWF1
3
0.17%
SMO1/SMO2
3
0.17%
DWF5
3
0.17%
DET2
3
0.17%
HMGR
3
0.17%
MVD
3
0.17%
MCT/IspD
3
0.17%
HDR/IspH
3
0.17%
CMK/IspE
3
0.17%
BBE
2
0.12%
HYD1
2
0.12%
CPI1
2
0.12%
DWF7
2
0.12%
IDI
2
0.12%
DXS
2
0.12%
FPPS
2
0.12%
DXR
2
0.12%
HDS/IspG
2
0.12%
PMK
2
0.12%
ODC
1
0.06%
TYDC_DDC
1
0.06%
TDC
1
0.06%
F5H/CYP84A
1
0.06%
FK
1
0.06%
ROT3/CYP90C1
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 186 | 11 | POD (86) | View species results |
| Terpenoid pathway | 145 | 19 | BAHD (58) | View species results |
| Alkaloid pathway | 133 | 16 | GS (25) | View species results |
| Flavonoid pathway | 74 | 10 | UFGT (24) | View species results |
| Rosmarinic acid pathway | 63 | 7 | C4H (19) | View species results |
| Steroid pathway | 39 | 11 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 536 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 154 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Gackstroemia3868450008950 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia4734810033100 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia4913380036250 | Alkaloid | IO | low | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia4985660042110 | Alkaloid | IO | medium | pass | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia5066800045850 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia5402210053510 | Alkaloid | IO | low | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia5425090054210 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia5827760086660 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6153200170070 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6171380178900 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6171380178910 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6183610184780 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6200110192720 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6229060204890 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6877500226960 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| Gackstroemia6877510226990 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |