Gackstroemia (gackstroemia)
Imported from atlas release summary for Gackstroemia.
975
Candidate Protein Records
640
Pathway-Level Records
1730
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1730
Family-Level Calls
4CL
6.94%
BAHD
5.78%
POD
5.2%
C3'H/CYP98A
5.09%
C4H
4.8%
STR
3.53%
GS
3.29%
IFS
3.18%
Other Families
62.2%
More Families (92)
CYP76
55
3.18%
NMT
51
2.95%
T3O
41
2.37%
IFR
41
2.37%
TRI/TRII
40
2.31%
CAD
37
2.14%
F3H
36
2.08%
DWF4/CYP90B1
35
2.02%
HCT
31
1.79%
BR6OX2/CYP85A2
30
1.73%
F3'H/CYP75B
28
1.62%
UGT
27
1.56%
UFGT
26
1.5%
7DLGT
25
1.45%
H6H
24
1.39%
RAS
23
1.33%
LAC
19
1.1%
TPS
19
1.1%
PAL
18
1.04%
CAS
17
0.98%
IO
16
0.92%
CODM/T6ODM
16
0.92%
TAT
16
0.92%
F3'5'H/CYP75A
15
0.87%
COMT
15
0.87%
T16H
14
0.81%
CSE
14
0.81%
SMT1/SMT2/SMT3
14
0.81%
DFR
13
0.75%
SLS
12
0.69%
CCR
12
0.69%
GGPPS
12
0.69%
GES
11
0.64%
G8O/G8H
11
0.64%
COR
11
0.64%
CYP90D1
11
0.64%
8HGO
10
0.58%
CNMT
10
0.58%
PYKS
10
0.58%
SGD
10
0.58%
CPD/CYP90A1
10
0.58%
ANR
9
0.52%
PMT
8
0.46%
LAMT
8
0.46%
CPR
8
0.46%
HPPR
8
0.46%
NCS
7
0.4%
CHS
7
0.4%
CCoAOMT
6
0.35%
BR6OX1/CYP85A1
6
0.35%
CYP51G1
6
0.35%
CYP71
6
0.35%
AACT
6
0.35%
MPO
5
0.29%
CYP719
5
0.29%
FNS
5
0.29%
CYP80B1
4
0.23%
6OMT_4OMT_SOMT
4
0.23%
ANS/LDOX
4
0.23%
SQE
4
0.23%
SQS/FDFT1
4
0.23%
MVK
4
0.23%
7DLH
3
0.17%
16OMT
3
0.17%
ADC
3
0.17%
CHI
3
0.17%
DWF1
3
0.17%
SMO1/SMO2
3
0.17%
DWF5
3
0.17%
DET2
3
0.17%
HMGR
3
0.17%
MVD
3
0.17%
MCT/IspD
3
0.17%
HDR/IspH
3
0.17%
CMK/IspE
3
0.17%
BBE
2
0.12%
HYD1
2
0.12%
CPI1
2
0.12%
DWF7
2
0.12%
IDI
2
0.12%
DXS
2
0.12%
FPPS
2
0.12%
DXR
2
0.12%
HDS/IspG
2
0.12%
PMK
2
0.12%
ODC
1
0.06%
TYDC_DDC
1
0.06%
TDC
1
0.06%
F5H/CYP84A
1
0.06%
FK
1
0.06%
ROT3/CYP90C1
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 186 | 11 | POD (86) | View species results |
| Terpenoid pathway | 145 | 19 | BAHD (58) | View species results |
| Alkaloid pathway | 133 | 16 | GS (25) | View species results |
| Flavonoid pathway | 74 | 10 | UFGT (24) | View species results |
| Rosmarinic acid pathway | 63 | 7 | C4H (19) | View species results |
| Steroid pathway | 39 | 11 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 536 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 154 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Gackstroemia5452680058180 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia5565920060810 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia5567220061230 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia5586540063430 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia5661450073930 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia5717060075370 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia5829870087350 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia5912260097550 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia5992810113630 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6029500123170 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6048330127800 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6054440129280 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6065050133010 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6088600141880 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6106580148460 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6108670149710 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6118160153580 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6140710164070 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6165940176540 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6172900179760 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6174810180540 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6174810180550 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6187010186270 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6190790188110 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6198300191860 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6198300191870 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6198300191880 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6198650192010 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6199160192250 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6199160192260 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6205830195250 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6206290195570 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6230370205420 | Alkaloid | TRI/TRII | low | borderline |
| Gackstroemia6243520211130 | Alkaloid | TRI/TRII | medium | pass |
| Gackstroemia6065440133150 | Alkaloid | TYDC_DDC | low | borderline |
| Gackstroemia3716520003920 | Flavonoid | 4CL | medium | pass |
| Gackstroemia3933800011870 | Flavonoid | 4CL | low | borderline |
| Gackstroemia3996900017060 | Flavonoid | 4CL | low | borderline |
| Gackstroemia4486730028530 | Flavonoid | 4CL | medium | pass |
| Gackstroemia4656150029850 | Flavonoid | 4CL | low | borderline |
| Gackstroemia4707570030680 | Flavonoid | 4CL | low | borderline |
| Gackstroemia4707570030770 | Flavonoid | 4CL | low | borderline |
| Gackstroemia4852300035350 | Flavonoid | 4CL | medium | pass |
| Gackstroemia4940120038330 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5042930045410 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5328350048850 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5399000053290 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5459260058830 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5575940062840 | Flavonoid | 4CL | low | borderline |
| Gackstroemia5593870064850 | Flavonoid | 4CL | low | borderline |