PlantSME Plant secondary metabolism enzyme database

Gastrodia elata (gastrodia_elata)

Imported from atlas release summary for Gastrodia elata.

699
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.04% Alkaloid pathway 23.03% Phenylpropanoid pathway 19.74% Flavonoid pathway 14.02% Rosmarinic acid pathway 10.01% Steroid pathway 5.15%
Family Distribution
C4H 7.03% C3'H/CYP98A 6.48% BAHD 5.6% 4CL 4.62% T3O 4.07% IFS 3.85% POD 3.52% CYP76 3.46%
Other Families 61.37%
More Families (95)
UGT 60 3.3% NMT 57 3.13% 7DLGT 54 2.97% UFGT 54 2.97% F3'H/CYP75B 51 2.8% STR 45 2.47% BR6OX2/CYP85A2 44 2.42% CYP71 44 2.42% DWF4/CYP90B1 37 2.03% F3H 36 1.98% CAD 30 1.65% GS 24 1.32% PYKS 22 1.21% SMT1/SMT2/SMT3 22 1.21% TPS 21 1.15% SLS 20 1.1% CODM/T6ODM 19 1.04% CYP90D1 19 1.04% GES 18 0.99% PAL 18 0.99% CAS 18 0.99% G8O/G8H 17 0.93% IFR 16 0.88% LAC 16 0.88% CSE 14 0.77% CYP51G1 14 0.77% H6H 13 0.71% SGD 13 0.71% T16H 12 0.66% NCS 12 0.66% COMT 12 0.66% TRI/TRII 11 0.6% CHS 11 0.6% ANR 11 0.6% F5H/CYP84A 10 0.55% IO 9 0.49% CNMT 9 0.49% FNS 9 0.49% CCR 9 0.49% RAS 9 0.49% ROT3/CYP90C1 9 0.49% BBE 8 0.44% PMT 7 0.38% 16OMT 7 0.38% HPPR 7 0.38% 8HGO 6 0.33% F3'5'H/CYP75A 6 0.33% GGPPS 6 0.33% LAMT 5 0.27% MPO 5 0.27% CYP719 5 0.27% SQS/FDFT1 5 0.27% DET2 5 0.27% AACT 5 0.27% DFR 4 0.22% CCoAOMT 4 0.22% HCT 4 0.22% CPR 4 0.22% TAT 4 0.22% FPPS 4 0.22% XMT_MXMT_DXMT 3 0.16% 7DLH 3 0.16% ISY 3 0.16% ANS/LDOX 3 0.16% CHI 3 0.16% BR6OX1/CYP85A1 3 0.16% CPD/CYP90A1 3 0.16% HMGR 3 0.16% HMGS 3 0.16% IDI 3 0.16% MVK 3 0.16% COR 2 0.11% ADC 2 0.11% 6OMT_4OMT_SOMT 2 0.11% CYP80B1 2 0.11% FLS 2 0.11% CPI1 2 0.11% SMO1/SMO2 2 0.11% MVD 2 0.11% CMK/IspE 2 0.11% HDR/IspH 2 0.11% TDC 1 0.05% TYDC_DDC 1 0.05% SQE 1 0.05% HYD1 1 0.05% FK 1 0.05% DWF1 1 0.05% DWF5 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% MCT/IspD 1 0.05% DXS 1 0.05% PMK 1 0.05% DXR 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 196 19 BAHD (74) View species results
Alkaloid pathway 161 18 NMT (35) View species results
Phenylpropanoid pathway 138 12 POD (61) View species results
Flavonoid pathway 98 9 UFGT (51) View species results
Rosmarinic acid pathway 70 7 C4H (30) View species results
Steroid pathway 36 12 SMT1/SMT2/SMT3 (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 761 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 115 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F5H/CYP84A
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Gene Pathway Family Confidence Status Best Target
GelaGWHAAEX000000040004170.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000000330052380.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000000330052400.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000000360054880.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000000720093850.1 Phenylpropanoid F5H/CYP84A low borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000000760097170.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000001510148820.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000002180175070.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000002880185800.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH
GelaGWHAAEX000003200186790.1 Phenylpropanoid F5H/CYP84A medium borderline F5H_CYP84A__00001__sp_Q42600_C84A1_ARATH