Gastrodia elata (gastrodia_elata)
Imported from atlas release summary for Gastrodia elata.
699
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
699
Candidate Genes
C4H
7.03%
C3'H/CYP98A
6.48%
BAHD
5.6%
4CL
4.62%
T3O
4.07%
IFS
3.85%
POD
3.52%
CYP76
3.46%
Other Families
61.37%
More Families (95)
UGT
60
3.3%
NMT
57
3.13%
7DLGT
54
2.97%
UFGT
54
2.97%
F3'H/CYP75B
51
2.8%
STR
45
2.47%
BR6OX2/CYP85A2
44
2.42%
CYP71
44
2.42%
DWF4/CYP90B1
37
2.03%
F3H
36
1.98%
CAD
30
1.65%
GS
24
1.32%
PYKS
22
1.21%
SMT1/SMT2/SMT3
22
1.21%
TPS
21
1.15%
SLS
20
1.1%
CODM/T6ODM
19
1.04%
CYP90D1
19
1.04%
GES
18
0.99%
PAL
18
0.99%
CAS
18
0.99%
G8O/G8H
17
0.93%
IFR
16
0.88%
LAC
16
0.88%
CSE
14
0.77%
CYP51G1
14
0.77%
H6H
13
0.71%
SGD
13
0.71%
T16H
12
0.66%
NCS
12
0.66%
COMT
12
0.66%
TRI/TRII
11
0.6%
CHS
11
0.6%
ANR
11
0.6%
F5H/CYP84A
10
0.55%
IO
9
0.49%
CNMT
9
0.49%
FNS
9
0.49%
CCR
9
0.49%
RAS
9
0.49%
ROT3/CYP90C1
9
0.49%
BBE
8
0.44%
PMT
7
0.38%
16OMT
7
0.38%
HPPR
7
0.38%
8HGO
6
0.33%
F3'5'H/CYP75A
6
0.33%
GGPPS
6
0.33%
LAMT
5
0.27%
MPO
5
0.27%
CYP719
5
0.27%
SQS/FDFT1
5
0.27%
DET2
5
0.27%
AACT
5
0.27%
DFR
4
0.22%
CCoAOMT
4
0.22%
HCT
4
0.22%
CPR
4
0.22%
TAT
4
0.22%
FPPS
4
0.22%
XMT_MXMT_DXMT
3
0.16%
7DLH
3
0.16%
ISY
3
0.16%
ANS/LDOX
3
0.16%
CHI
3
0.16%
BR6OX1/CYP85A1
3
0.16%
CPD/CYP90A1
3
0.16%
HMGR
3
0.16%
HMGS
3
0.16%
IDI
3
0.16%
MVK
3
0.16%
COR
2
0.11%
ADC
2
0.11%
6OMT_4OMT_SOMT
2
0.11%
CYP80B1
2
0.11%
FLS
2
0.11%
CPI1
2
0.11%
SMO1/SMO2
2
0.11%
MVD
2
0.11%
CMK/IspE
2
0.11%
HDR/IspH
2
0.11%
TDC
1
0.05%
TYDC_DDC
1
0.05%
SQE
1
0.05%
HYD1
1
0.05%
FK
1
0.05%
DWF1
1
0.05%
DWF5
1
0.05%
DWF7
1
0.05%
HDS/IspG
1
0.05%
MCT/IspD
1
0.05%
DXS
1
0.05%
PMK
1
0.05%
DXR
1
0.05%
MDS/IspF
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 196 | 19 | BAHD (74) | View species results |
| Alkaloid pathway | 161 | 18 | NMT (35) | View species results |
| Phenylpropanoid pathway | 138 | 12 | POD (61) | View species results |
| Flavonoid pathway | 98 | 9 | UFGT (51) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (30) | View species results |
| Steroid pathway | 36 | 12 | SMT1/SMT2/SMT3 (15) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 761 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 115 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GelaGWHAAEX000000140027170.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| GelaGWHAAEX000000160028800.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000000760096690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000000860106740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000001010119230.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| GelaGWHAAEX000001150129350.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| GelaGWHAAEX000001550151030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000001550151040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000001830162110.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| GelaGWHAAEX000002430179980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| GelaGWHAAEX000002680184060.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |