PlantSME Plant secondary metabolism enzyme database

Gastrodia elata (gastrodia_elata)

Imported from atlas release summary for Gastrodia elata.

699
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.04% Alkaloid pathway 23.03% Phenylpropanoid pathway 19.74% Flavonoid pathway 14.02% Rosmarinic acid pathway 10.01% Steroid pathway 5.15%
Family Distribution
C4H 7.03% C3'H/CYP98A 6.48% BAHD 5.6% 4CL 4.62% T3O 4.07% IFS 3.85% POD 3.52% CYP76 3.46%
Other Families 61.37%
More Families (95)
UGT 60 3.3% NMT 57 3.13% 7DLGT 54 2.97% UFGT 54 2.97% F3'H/CYP75B 51 2.8% STR 45 2.47% BR6OX2/CYP85A2 44 2.42% CYP71 44 2.42% DWF4/CYP90B1 37 2.03% F3H 36 1.98% CAD 30 1.65% GS 24 1.32% PYKS 22 1.21% SMT1/SMT2/SMT3 22 1.21% TPS 21 1.15% SLS 20 1.1% CODM/T6ODM 19 1.04% CYP90D1 19 1.04% GES 18 0.99% PAL 18 0.99% CAS 18 0.99% G8O/G8H 17 0.93% IFR 16 0.88% LAC 16 0.88% CSE 14 0.77% CYP51G1 14 0.77% H6H 13 0.71% SGD 13 0.71% T16H 12 0.66% NCS 12 0.66% COMT 12 0.66% TRI/TRII 11 0.6% CHS 11 0.6% ANR 11 0.6% F5H/CYP84A 10 0.55% IO 9 0.49% CNMT 9 0.49% FNS 9 0.49% CCR 9 0.49% RAS 9 0.49% ROT3/CYP90C1 9 0.49% BBE 8 0.44% PMT 7 0.38% 16OMT 7 0.38% HPPR 7 0.38% 8HGO 6 0.33% F3'5'H/CYP75A 6 0.33% GGPPS 6 0.33% LAMT 5 0.27% MPO 5 0.27% CYP719 5 0.27% SQS/FDFT1 5 0.27% DET2 5 0.27% AACT 5 0.27% DFR 4 0.22% CCoAOMT 4 0.22% HCT 4 0.22% CPR 4 0.22% TAT 4 0.22% FPPS 4 0.22% XMT_MXMT_DXMT 3 0.16% 7DLH 3 0.16% ISY 3 0.16% ANS/LDOX 3 0.16% CHI 3 0.16% BR6OX1/CYP85A1 3 0.16% CPD/CYP90A1 3 0.16% HMGR 3 0.16% HMGS 3 0.16% IDI 3 0.16% MVK 3 0.16% COR 2 0.11% ADC 2 0.11% 6OMT_4OMT_SOMT 2 0.11% CYP80B1 2 0.11% FLS 2 0.11% CPI1 2 0.11% SMO1/SMO2 2 0.11% MVD 2 0.11% CMK/IspE 2 0.11% HDR/IspH 2 0.11% TDC 1 0.05% TYDC_DDC 1 0.05% SQE 1 0.05% HYD1 1 0.05% FK 1 0.05% DWF1 1 0.05% DWF5 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% MCT/IspD 1 0.05% DXS 1 0.05% PMK 1 0.05% DXR 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 196 19 BAHD (74) View species results
Alkaloid pathway 161 18 NMT (35) View species results
Phenylpropanoid pathway 138 12 POD (61) View species results
Flavonoid pathway 98 9 UFGT (51) View species results
Rosmarinic acid pathway 70 7 C4H (30) View species results
Steroid pathway 36 12 SMT1/SMT2/SMT3 (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 761 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 115 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
GelaGWHAAEX000001080124280.1 Phenylpropanoid POD medium pass POD__00018__sp_Q8H0V5_OCP3_ARATH
GelaGWHAAEX000001290137110.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
GelaGWHAAEX000001310138800.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
GelaGWHAAEX000001350140930.1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
GelaGWHAAEX000001410144250.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
GelaGWHAAEX000001700157200.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
GelaGWHAAEX000001720158010.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
GelaGWHAAEX000001780160830.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
GelaGWHAAEX000001840162740.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
GelaGWHAAEX000001890165030.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
GelaGWHAAEX000001930166200.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
GelaGWHAAEX000002060170950.1 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
GelaGWHAAEX000003860187740.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
GelaGWHAAEX000004130187880.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA