PlantSME Plant secondary metabolism enzyme database

Glycine max (glycine_max)

Imported from atlas release summary for Glycine max.

3565
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.09% Phenylpropanoid pathway 23.76% Alkaloid pathway 23.34% Flavonoid pathway 11.75% Rosmarinic acid pathway 7.8% Steroid pathway 7.27%
Family Distribution
BAHD 6.27% C3'H/CYP98A 5.16% C4H 5.11% 4CL 5.05% POD 4.81% NMT 3.81% IFS 3.39% UGT 3.32%
Other Families 63.09%
More Families (96)
UFGT 263 3.18% F3H 257 3.11% T3O 255 3.09% 7DLGT 253 3.06% CYP76 238 2.88% STR 212 2.57% DWF4/CYP90B1 169 2.05% CODM/T6ODM 162 1.96% SMT1/SMT2/SMT3 155 1.88% F3'H/CYP75B 137 1.66% CYP71 137 1.66% H6H 127 1.54% CAS 115 1.39% SGD 110 1.33% BR6OX2/CYP85A2 102 1.23% CAD 101 1.22% LAC 101 1.22% TRI/TRII 93 1.13% CSE 92 1.11% IFR 86 1.04% CYP90D1 81 0.98% RAS 80 0.97% COMT 77 0.93% HCT 72 0.87% T16H 70 0.85% CCR 65 0.79% GS 64 0.77% PYKS 63 0.76% PMT 58 0.7% 16OMT 52 0.63% ANR 51 0.62% IO 50 0.61% BBE 49 0.59% COR 48 0.58% TPS 46 0.56% MPO 44 0.53% GES 44 0.53% 8HGO 43 0.52% SLS 43 0.52% TAT 43 0.52% FNS 40 0.48% G8O/G8H 38 0.46% DFR 38 0.46% CPD/CYP90A1 35 0.42% BR6OX1/CYP85A1 35 0.42% LAMT 34 0.41% 7DLH 34 0.41% PAL 33 0.4% NCS 32 0.39% F3'5'H/CYP75A 32 0.39% ANS/LDOX 32 0.39% DXS 29 0.35% CNMT 28 0.34% CPR 28 0.34% CCoAOMT 27 0.33% F5H/CYP84A 26 0.31% CHS 25 0.3% CYP51G1 25 0.3% ROT3/CYP90C1 25 0.3% SQS/FDFT1 25 0.3% ADC 20 0.24% SQE 16 0.19% SMO1/SMO2 15 0.18% GGPPS 15 0.18% DET2 13 0.16% AACT 13 0.16% TDC 12 0.15% CHI 12 0.15% MVD 12 0.15% HMGR 11 0.13% MVK 11 0.13% CYP719 10 0.12% FPPS 10 0.12% XMT_MXMT_DXMT 9 0.11% HMGS 9 0.11% HDS/IspG 9 0.11% DXR 8 0.1% FLS 7 0.08% HPPR 7 0.08% CPI1 7 0.08% TYDC_DDC 6 0.07% ISY 6 0.07% MCT/IspD 6 0.07% HYD1 5 0.06% CMK/IspE 5 0.06% DWF1 4 0.05% PMK 4 0.05% HDR/IspH 4 0.05% ODC 3 0.04% FK 3 0.04% CYP80B1 2 0.02% 6OMT_4OMT_SOMT 2 0.02% DWF7 2 0.02% IDI 2 0.02% DWF5 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 930 19 BAHD (425) View species results
Phenylpropanoid pathway 847 11 POD (383) View species results
Alkaloid pathway 832 21 NMT (201) View species results
Flavonoid pathway 419 11 UFGT (244) View species results
Rosmarinic acid pathway 278 7 C4H (100) View species results
Steroid pathway 259 12 CAS (101) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2672 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 670 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
Gmax01G0013490.1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Gmax01G0013490.2 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Gmax02G0005740.1 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
Gmax02G0005740.2 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
Gmax03G0003150.1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
Gmax07G0004360.1 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE
Gmax07G0024430.1 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
Gmax09G0019810.1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Gmax09G0019810.2 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Gmax16G0012510.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME