PlantSME Plant secondary metabolism enzyme database

Glycine max (glycine_max)

Imported from atlas release summary for Glycine max.

4416
Candidate Protein Records
3565
Pathway-Level Records
8260
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 26.09% Phenylpropanoid pathway 23.76% Alkaloid pathway 23.34% Flavonoid pathway 11.75% Rosmarinic acid pathway 7.8% Steroid pathway 7.27%
Family Distribution
BAHD 6.27% C3'H/CYP98A 5.16% C4H 5.11% 4CL 5.05% POD 4.81% NMT 3.81% IFS 3.39% UGT 3.32%
Other Families 63.09%
More Families (96)
UFGT 263 3.18% F3H 257 3.11% T3O 255 3.09% 7DLGT 253 3.06% CYP76 238 2.88% STR 212 2.57% DWF4/CYP90B1 169 2.05% CODM/T6ODM 162 1.96% SMT1/SMT2/SMT3 155 1.88% F3'H/CYP75B 137 1.66% CYP71 137 1.66% H6H 127 1.54% CAS 115 1.39% SGD 110 1.33% BR6OX2/CYP85A2 102 1.23% CAD 101 1.22% LAC 101 1.22% TRI/TRII 93 1.13% CSE 92 1.11% IFR 86 1.04% CYP90D1 81 0.98% RAS 80 0.97% COMT 77 0.93% HCT 72 0.87% T16H 70 0.85% CCR 65 0.79% GS 64 0.77% PYKS 63 0.76% PMT 58 0.7% 16OMT 52 0.63% ANR 51 0.62% IO 50 0.61% BBE 49 0.59% COR 48 0.58% TPS 46 0.56% MPO 44 0.53% GES 44 0.53% 8HGO 43 0.52% SLS 43 0.52% TAT 43 0.52% FNS 40 0.48% G8O/G8H 38 0.46% DFR 38 0.46% CPD/CYP90A1 35 0.42% BR6OX1/CYP85A1 35 0.42% LAMT 34 0.41% 7DLH 34 0.41% PAL 33 0.4% NCS 32 0.39% F3'5'H/CYP75A 32 0.39% ANS/LDOX 32 0.39% DXS 29 0.35% CNMT 28 0.34% CPR 28 0.34% CCoAOMT 27 0.33% F5H/CYP84A 26 0.31% CHS 25 0.3% CYP51G1 25 0.3% ROT3/CYP90C1 25 0.3% SQS/FDFT1 25 0.3% ADC 20 0.24% SQE 16 0.19% SMO1/SMO2 15 0.18% GGPPS 15 0.18% DET2 13 0.16% AACT 13 0.16% TDC 12 0.15% CHI 12 0.15% MVD 12 0.15% HMGR 11 0.13% MVK 11 0.13% CYP719 10 0.12% FPPS 10 0.12% XMT_MXMT_DXMT 9 0.11% HMGS 9 0.11% HDS/IspG 9 0.11% DXR 8 0.1% FLS 7 0.08% HPPR 7 0.08% CPI1 7 0.08% TYDC_DDC 6 0.07% ISY 6 0.07% MCT/IspD 6 0.07% HYD1 5 0.06% CMK/IspE 5 0.06% DWF1 4 0.05% PMK 4 0.05% HDR/IspH 4 0.05% ODC 3 0.04% FK 3 0.04% CYP80B1 2 0.02% 6OMT_4OMT_SOMT 2 0.02% DWF7 2 0.02% IDI 2 0.02% DWF5 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 930 19 BAHD (425) View species results
Phenylpropanoid pathway 847 11 POD (383) View species results
Alkaloid pathway 832 21 NMT (201) View species results
Flavonoid pathway 419 11 UFGT (244) View species results
Rosmarinic acid pathway 278 7 C4H (100) View species results
Steroid pathway 259 12 CAS (101) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2672 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 670 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Gmax19G0017230.1 Terpenoid UGT medium pass UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
Gmax19G0017250.1 Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Gmax19G0017260.1 Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Gmax19G0017270.1 Terpenoid UGT medium pass UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
Gmax19G0017280.1 Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
Gmax19G0024050.1 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Gmax20G0004800.1 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
Gmax20G0011070.1 Terpenoid UGT medium pass UGT__00015__sp_A0A193AU77_GGT24_PUNGR
Gmax20G0018040.1 Terpenoid UGT medium pass UGT__00037__sp_I1LCI8_FG2KO_SOYBN
Gmax20G0018060.1 Terpenoid UGT medium pass UGT__00114__sp_U3THC0_FG2KI_SOYBN
GmaxGm14_scaffold_840000060.1 Terpenoid UGT medium pass UGT__00082__sp_Q9C9B0_U89B1_ARATH
Gmaxscaffold_1430000300.1 Terpenoid UGT medium pass UGT__00086__sp_Q9LFJ8_U78D2_ARATH