Gossypium bickii (gossypium_bickii)
/
Imported from atlas release summary for Gossypium bickii.
1891
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1891
Candidate Genes
C4H
7.12%
C3'H/CYP98A
6.16%
BAHD
5.38%
CYP76
4.0%
T3O
3.82%
IFS
3.82%
POD
3.59%
UGT
3.36%
Other Families
62.76%
More Families (97)
7DLGT
163
3.34%
F3H
162
3.32%
4CL
162
3.32%
UFGT
160
3.28%
DWF4/CYP90B1
102
2.09%
BR6OX2/CYP85A2
101
2.07%
NMT
96
1.97%
STR
93
1.91%
CODM/T6ODM
90
1.85%
F3'H/CYP75B
88
1.81%
CAD
78
1.6%
CAS
75
1.54%
H6H
70
1.44%
CYP90D1
70
1.44%
LAC
69
1.42%
TPS
66
1.35%
CYP71
65
1.33%
GES
63
1.29%
7DLH
60
1.23%
SMT1/SMT2/SMT3
57
1.17%
TRI/TRII
54
1.11%
COMT
53
1.09%
CSE
51
1.05%
BBE
50
1.03%
GS
45
0.92%
HCT
44
0.9%
16OMT
43
0.88%
RAS
38
0.78%
PYKS
37
0.76%
IO
37
0.76%
IFR
33
0.68%
NCS
32
0.66%
F3'5'H/CYP75A
30
0.62%
G8O/G8H
28
0.57%
ANR
28
0.57%
CPD/CYP90A1
24
0.49%
SGD
23
0.47%
T16H
22
0.45%
F5H/CYP84A
21
0.43%
CCR
21
0.43%
COR
20
0.41%
FNS
20
0.41%
PMT
19
0.39%
TAT
19
0.39%
ROT3/CYP90C1
19
0.39%
CYP51G1
19
0.39%
PAL
18
0.37%
8HGO
17
0.35%
SLS
17
0.35%
BR6OX1/CYP85A1
16
0.33%
SQE
16
0.33%
GGPPS
15
0.31%
ANS/LDOX
14
0.29%
LAMT
13
0.27%
CNMT
13
0.27%
DFR
12
0.25%
CHS
11
0.23%
FPPS
11
0.23%
CCoAOMT
10
0.21%
HPPR
8
0.16%
SMO1/SMO2
8
0.16%
HMGR
8
0.16%
MVK
8
0.16%
TYDC_DDC
7
0.14%
MPO
7
0.14%
ISY
7
0.14%
CPR
7
0.14%
SQS/FDFT1
7
0.14%
AACT
6
0.12%
DXS
6
0.12%
CYP719
5
0.1%
CYP80B1
5
0.1%
FLS
5
0.1%
DET2
5
0.1%
HDR/IspH
5
0.1%
MVD
5
0.1%
ADC
4
0.08%
CHI
4
0.08%
TDC
3
0.06%
ODC
3
0.06%
XMT_MXMT_DXMT
3
0.06%
DWF5
3
0.06%
GPPS
3
0.06%
HMGS
3
0.06%
MCT/IspD
3
0.06%
DXR
3
0.06%
DWF1
2
0.04%
HYD1
2
0.04%
DWF7
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 547 | 21 | BAHD (203) | View species results |
| Alkaloid pathway | 427 | 20 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 425 | 11 | POD (173) | View species results |
| Flavonoid pathway | 229 | 9 | UFGT (151) | View species results |
| Rosmarinic acid pathway | 142 | 7 | C4H (57) | View species results |
| Steroid pathway | 121 | 11 | CAS (57) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1944 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 344 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| gossypium_bickii_Gbic_01G017030.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_01G025400.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_02G008430.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G004780.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G004790.1 | Alkaloid | COR | low | borderline | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G016400.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G016920.2 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G021470.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_03G021500.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_04G015560.2 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| gossypium_bickii_Gbic_04G015570.1 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| gossypium_bickii_Gbic_04G015590.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_04G015600.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_04G020590.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| gossypium_bickii_Gbic_04G022430.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_05G025510.1 | Alkaloid | COR | low | borderline | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| gossypium_bickii_Gbic_09G019950.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_09G019960.1 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| gossypium_bickii_Gbic_11G041790.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| gossypium_bickii_Gbic_12G019800.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |