PlantSME Plant secondary metabolism enzyme database

Gossypium bickii (gossypium_bickii)

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Imported from atlas release summary for Gossypium bickii.

1891
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 22.58% Phenylpropanoid pathway 22.47% Flavonoid pathway 12.11% Rosmarinic acid pathway 7.51% Steroid pathway 6.4%
Family Distribution
C4H 7.12% C3'H/CYP98A 6.16% BAHD 5.38% CYP76 4.0% T3O 3.82% IFS 3.82% POD 3.59% UGT 3.36%
Other Families 62.76%
More Families (97)
7DLGT 163 3.34% F3H 162 3.32% 4CL 162 3.32% UFGT 160 3.28% DWF4/CYP90B1 102 2.09% BR6OX2/CYP85A2 101 2.07% NMT 96 1.97% STR 93 1.91% CODM/T6ODM 90 1.85% F3'H/CYP75B 88 1.81% CAD 78 1.6% CAS 75 1.54% H6H 70 1.44% CYP90D1 70 1.44% LAC 69 1.42% TPS 66 1.35% CYP71 65 1.33% GES 63 1.29% 7DLH 60 1.23% SMT1/SMT2/SMT3 57 1.17% TRI/TRII 54 1.11% COMT 53 1.09% CSE 51 1.05% BBE 50 1.03% GS 45 0.92% HCT 44 0.9% 16OMT 43 0.88% RAS 38 0.78% PYKS 37 0.76% IO 37 0.76% IFR 33 0.68% NCS 32 0.66% F3'5'H/CYP75A 30 0.62% G8O/G8H 28 0.57% ANR 28 0.57% CPD/CYP90A1 24 0.49% SGD 23 0.47% T16H 22 0.45% F5H/CYP84A 21 0.43% CCR 21 0.43% COR 20 0.41% FNS 20 0.41% PMT 19 0.39% TAT 19 0.39% ROT3/CYP90C1 19 0.39% CYP51G1 19 0.39% PAL 18 0.37% 8HGO 17 0.35% SLS 17 0.35% BR6OX1/CYP85A1 16 0.33% SQE 16 0.33% GGPPS 15 0.31% ANS/LDOX 14 0.29% LAMT 13 0.27% CNMT 13 0.27% DFR 12 0.25% CHS 11 0.23% FPPS 11 0.23% CCoAOMT 10 0.21% HPPR 8 0.16% SMO1/SMO2 8 0.16% HMGR 8 0.16% MVK 8 0.16% TYDC_DDC 7 0.14% MPO 7 0.14% ISY 7 0.14% CPR 7 0.14% SQS/FDFT1 7 0.14% AACT 6 0.12% DXS 6 0.12% CYP719 5 0.1% CYP80B1 5 0.1% FLS 5 0.1% DET2 5 0.1% HDR/IspH 5 0.1% MVD 5 0.1% ADC 4 0.08% CHI 4 0.08% TDC 3 0.06% ODC 3 0.06% XMT_MXMT_DXMT 3 0.06% DWF5 3 0.06% GPPS 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% DWF1 2 0.04% HYD1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 547 21 BAHD (203) View species results
Alkaloid pathway 427 20 7DLGT (81) View species results
Phenylpropanoid pathway 425 11 POD (173) View species results
Flavonoid pathway 229 9 UFGT (151) View species results
Rosmarinic acid pathway 142 7 C4H (57) View species results
Steroid pathway 121 11 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1944 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
gossypium_bickii_Gbic_01G001770.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
gossypium_bickii_Gbic_07G008150.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_bickii_Gbic_07G017840.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
gossypium_bickii_Gbic_10G023740.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_bickii_Gbic_10G029980.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_bickii_Gbic_13G007980.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_bickii_Gbic_13G008010.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO