PlantSME Plant secondary metabolism enzyme database

Gossypium bickii (gossypium_bickii)

/

Imported from atlas release summary for Gossypium bickii.

1891
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 22.58% Phenylpropanoid pathway 22.47% Flavonoid pathway 12.11% Rosmarinic acid pathway 7.51% Steroid pathway 6.4%
Family Distribution
C4H 7.12% C3'H/CYP98A 6.16% BAHD 5.38% CYP76 4.0% T3O 3.82% IFS 3.82% POD 3.59% UGT 3.36%
Other Families 62.76%
More Families (97)
7DLGT 163 3.34% F3H 162 3.32% 4CL 162 3.32% UFGT 160 3.28% DWF4/CYP90B1 102 2.09% BR6OX2/CYP85A2 101 2.07% NMT 96 1.97% STR 93 1.91% CODM/T6ODM 90 1.85% F3'H/CYP75B 88 1.81% CAD 78 1.6% CAS 75 1.54% H6H 70 1.44% CYP90D1 70 1.44% LAC 69 1.42% TPS 66 1.35% CYP71 65 1.33% GES 63 1.29% 7DLH 60 1.23% SMT1/SMT2/SMT3 57 1.17% TRI/TRII 54 1.11% COMT 53 1.09% CSE 51 1.05% BBE 50 1.03% GS 45 0.92% HCT 44 0.9% 16OMT 43 0.88% RAS 38 0.78% PYKS 37 0.76% IO 37 0.76% IFR 33 0.68% NCS 32 0.66% F3'5'H/CYP75A 30 0.62% G8O/G8H 28 0.57% ANR 28 0.57% CPD/CYP90A1 24 0.49% SGD 23 0.47% T16H 22 0.45% F5H/CYP84A 21 0.43% CCR 21 0.43% COR 20 0.41% FNS 20 0.41% PMT 19 0.39% TAT 19 0.39% ROT3/CYP90C1 19 0.39% CYP51G1 19 0.39% PAL 18 0.37% 8HGO 17 0.35% SLS 17 0.35% BR6OX1/CYP85A1 16 0.33% SQE 16 0.33% GGPPS 15 0.31% ANS/LDOX 14 0.29% LAMT 13 0.27% CNMT 13 0.27% DFR 12 0.25% CHS 11 0.23% FPPS 11 0.23% CCoAOMT 10 0.21% HPPR 8 0.16% SMO1/SMO2 8 0.16% HMGR 8 0.16% MVK 8 0.16% TYDC_DDC 7 0.14% MPO 7 0.14% ISY 7 0.14% CPR 7 0.14% SQS/FDFT1 7 0.14% AACT 6 0.12% DXS 6 0.12% CYP719 5 0.1% CYP80B1 5 0.1% FLS 5 0.1% DET2 5 0.1% HDR/IspH 5 0.1% MVD 5 0.1% ADC 4 0.08% CHI 4 0.08% TDC 3 0.06% ODC 3 0.06% XMT_MXMT_DXMT 3 0.06% DWF5 3 0.06% GPPS 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% DWF1 2 0.04% HYD1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 547 21 BAHD (203) View species results
Alkaloid pathway 427 20 7DLGT (81) View species results
Phenylpropanoid pathway 425 11 POD (173) View species results
Flavonoid pathway 229 9 UFGT (151) View species results
Rosmarinic acid pathway 142 7 C4H (57) View species results
Steroid pathway 121 11 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1944 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
Reset
Gene Pathway Family Confidence Status Best Target
gossypium_bickii_Gbic_13G016140.1 Terpenoid UGT medium pass UGT__00018__sp_A0A224AM54_708G1_CITJP
gossypium_bickii_Gbic_13G024630.1 Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
gossypium_bickii_Gbic_13G024660.1 Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
gossypium_bickii_Gbic_13G026120.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
gossypium_bickii_Gbic_13G026130.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
gossypium_bickii_Gbic_13G026150.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
gossypium_bickii_Gbic_13G026160.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
gossypium_bickii_Gbic_13G026170.1 Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
gossypium_bickii_Gbic_13G038020.1 Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
gossypium_bickii_Gbic_13G042270.1 Terpenoid UGT medium pass UGT__00027__sp_D3UAG0_U71K1_MALDO
gossypium_bickii_Gbic_13G044370.1 Terpenoid UGT medium pass UGT__00086__sp_Q9LFJ8_U78D2_ARATH
gossypium_bickii_Gbic_13G046140.1 Terpenoid UGT medium pass UGT__00044__sp_K4GIP0_73C12_BARVU
gossypium_bickii_Gbic_13G046220.1 Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
gossypium_bickii_Gbic_13G046230.1 Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE