PlantSME Plant secondary metabolism enzyme database

Gossypium bickii (gossypium_bickii)

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Imported from atlas release summary for Gossypium bickii.

2282
Candidate Protein Records
1891
Pathway-Level Records
4874
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 22.58% Phenylpropanoid pathway 22.47% Flavonoid pathway 12.11% Rosmarinic acid pathway 7.51% Steroid pathway 6.4%
Family Distribution
C4H 7.12% C3'H/CYP98A 6.16% BAHD 5.38% CYP76 4.0% T3O 3.82% IFS 3.82% POD 3.59% UGT 3.36%
Other Families 62.76%
More Families (97)
7DLGT 163 3.34% F3H 162 3.32% 4CL 162 3.32% UFGT 160 3.28% DWF4/CYP90B1 102 2.09% BR6OX2/CYP85A2 101 2.07% NMT 96 1.97% STR 93 1.91% CODM/T6ODM 90 1.85% F3'H/CYP75B 88 1.81% CAD 78 1.6% CAS 75 1.54% H6H 70 1.44% CYP90D1 70 1.44% LAC 69 1.42% TPS 66 1.35% CYP71 65 1.33% GES 63 1.29% 7DLH 60 1.23% SMT1/SMT2/SMT3 57 1.17% TRI/TRII 54 1.11% COMT 53 1.09% CSE 51 1.05% BBE 50 1.03% GS 45 0.92% HCT 44 0.9% 16OMT 43 0.88% RAS 38 0.78% PYKS 37 0.76% IO 37 0.76% IFR 33 0.68% NCS 32 0.66% F3'5'H/CYP75A 30 0.62% G8O/G8H 28 0.57% ANR 28 0.57% CPD/CYP90A1 24 0.49% SGD 23 0.47% T16H 22 0.45% F5H/CYP84A 21 0.43% CCR 21 0.43% COR 20 0.41% FNS 20 0.41% PMT 19 0.39% TAT 19 0.39% ROT3/CYP90C1 19 0.39% CYP51G1 19 0.39% PAL 18 0.37% 8HGO 17 0.35% SLS 17 0.35% BR6OX1/CYP85A1 16 0.33% SQE 16 0.33% GGPPS 15 0.31% ANS/LDOX 14 0.29% LAMT 13 0.27% CNMT 13 0.27% DFR 12 0.25% CHS 11 0.23% FPPS 11 0.23% CCoAOMT 10 0.21% HPPR 8 0.16% SMO1/SMO2 8 0.16% HMGR 8 0.16% MVK 8 0.16% TYDC_DDC 7 0.14% MPO 7 0.14% ISY 7 0.14% CPR 7 0.14% SQS/FDFT1 7 0.14% AACT 6 0.12% DXS 6 0.12% CYP719 5 0.1% CYP80B1 5 0.1% FLS 5 0.1% DET2 5 0.1% HDR/IspH 5 0.1% MVD 5 0.1% ADC 4 0.08% CHI 4 0.08% TDC 3 0.06% ODC 3 0.06% XMT_MXMT_DXMT 3 0.06% DWF5 3 0.06% GPPS 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% DWF1 2 0.04% HYD1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 547 21 BAHD (203) View species results
Alkaloid pathway 427 20 7DLGT (81) View species results
Phenylpropanoid pathway 425 11 POD (173) View species results
Flavonoid pathway 229 9 UFGT (151) View species results
Rosmarinic acid pathway 142 7 C4H (57) View species results
Steroid pathway 121 11 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1944 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
gossypium_bickii_Gbic_13G031340.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
gossypium_bickii_Gbic_13G032740.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
gossypium_bickii_Gbic_13G035690.1 Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
gossypium_bickii_Gbic_13G038850.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
gossypium_bickii_Gbic_13G038960.1 Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ
gossypium_bickii_Gbic_13G041010.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
gossypium_bickii_Gbic_13G042920.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
gossypium_bickii_Gbic_13G046930.1 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
gossypium_bickii_Gbic_13G047380.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
gossypium_bickii_Gbic_13G047810.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC