PlantSME Plant secondary metabolism enzyme database

Gossypium sturtianum (gossypium_sturtianum)

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Imported from atlas release summary for Gossypium sturtianum.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.38% Alkaloid pathway 22.39% Phenylpropanoid pathway 22.29% Flavonoid pathway 12.44% Rosmarinic acid pathway 8.05% Steroid pathway 6.45%
Family Distribution
C4H 7.19% C3'H/CYP98A 6.2% BAHD 5.2% CYP76 3.85% IFS 3.79% T3O 3.75% 4CL 3.57% POD 3.46%
Other Families 62.99%
More Families (97)
UGT 171 3.44% 7DLGT 165 3.32% UFGT 165 3.32% F3H 164 3.3% DWF4/CYP90B1 118 2.38% F3'H/CYP75B 95 1.91% BR6OX2/CYP85A2 94 1.89% STR 91 1.83% NMT 88 1.77% CODM/T6ODM 86 1.73% CAD 86 1.73% H6H 73 1.47% CAS 71 1.43% LAC 70 1.41% CYP90D1 70 1.41% CYP71 69 1.39% GES 64 1.29% TPS 64 1.29% TRI/TRII 56 1.13% SMT1/SMT2/SMT3 56 1.13% CSE 53 1.07% 7DLH 50 1.01% HCT 50 1.01% COMT 49 0.99% BBE 48 0.97% GS 43 0.87% 16OMT 39 0.79% PYKS 38 0.77% RAS 38 0.77% IO 36 0.73% IFR 34 0.68% NCS 31 0.62% T16H 31 0.62% ANR 31 0.62% G8O/G8H 30 0.6% SGD 29 0.58% PMT 27 0.54% F3'5'H/CYP75A 26 0.52% SLS 24 0.48% PAL 24 0.48% F5H/CYP84A 24 0.48% FNS 23 0.46% CPD/CYP90A1 23 0.46% CCR 22 0.44% TAT 22 0.44% COR 21 0.42% ROT3/CYP90C1 20 0.4% CYP51G1 18 0.36% 8HGO 17 0.34% CNMT 15 0.3% SQE 15 0.3% GGPPS 15 0.3% LAMT 14 0.28% BR6OX1/CYP85A1 13 0.26% ANS/LDOX 12 0.24% DFR 11 0.22% CCoAOMT 11 0.22% FPPS 11 0.22% CHS 10 0.2% TYDC_DDC 9 0.18% CPR 9 0.18% MPO 8 0.16% ISY 8 0.16% SQS/FDFT1 8 0.16% SMO1/SMO2 8 0.16% HMGR 8 0.16% MVK 8 0.16% DET2 7 0.14% AACT 7 0.14% HPPR 6 0.12% MVD 6 0.12% DXS 6 0.12% CYP80B1 5 0.1% ODC 4 0.08% ADC 4 0.08% CHI 4 0.08% HDR/IspH 4 0.08% TDC 3 0.06% CYP719 3 0.06% DWF5 3 0.06% GPPS 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% HDS/IspG 3 0.06% PMK 3 0.06% CYP80F1 2 0.04% XMT_MXMT_DXMT 2 0.04% FLS 2 0.04% DWF1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% FK 1 0.02% CPI1 1 0.02% HYD1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 550 21 BAHD (202) View species results
Alkaloid pathway 434 21 7DLGT (80) View species results
Phenylpropanoid pathway 432 11 POD (165) View species results
Flavonoid pathway 241 10 UFGT (156) View species results
Rosmarinic acid pathway 156 7 C4H (61) View species results
Steroid pathway 125 11 CAS (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1981 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
gossypium_sturtianum_Gstu01G027120 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
gossypium_sturtianum_Gstu07G008080 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu07G018880 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
gossypium_sturtianum_Gstu10G023290 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu10G023310 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu10G023380 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu10G029360 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu13G007650 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
gossypium_sturtianum_Gstu13G007720 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO