PlantSME Plant secondary metabolism enzyme database

Haplomitrium (haplomitrium)

Imported from atlas release summary for Haplomitrium.

679
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.13% Terpenoid pathway 20.77% Alkaloid pathway 20.47% Flavonoid pathway 11.93% Rosmarinic acid pathway 11.19% Steroid pathway 7.51%
Family Distribution
C4H 9.19% C3'H/CYP98A 6.67% CYP76 5.51% POD 5.25% IFS 4.72% BAHD 4.72% STR 3.15% 4CL 2.99%
Other Families 57.8%
More Families (95)
T3O 56 2.94% NMT 54 2.83% BR6OX2/CYP85A2 49 2.57% F3H 48 2.52% H6H 46 2.41% DWF4/CYP90B1 44 2.31% PYKS 41 2.15% CAS 40 2.1% PAL 39 2.05% CHS 33 1.73% SLS 24 1.26% RAS 24 1.26% SMT1/SMT2/SMT3 24 1.26% IO 23 1.21% G8O/G8H 22 1.15% IFR 22 1.15% F3'H/CYP75B 22 1.15% COMT 19 1.0% F3'5'H/CYP75A 18 0.94% CYP71 18 0.94% HCT 17 0.89% LAMT 15 0.79% 7DLGT 15 0.79% T16H 15 0.79% GS 15 0.79% UFGT 15 0.79% TRI/TRII 14 0.73% CODM/T6ODM 14 0.73% UGT 14 0.73% CYP719 13 0.68% 16OMT 13 0.68% CSE 13 0.68% BR6OX1/CYP85A1 13 0.68% FNS 12 0.63% CPD/CYP90A1 12 0.63% LAC 11 0.58% CAD 11 0.58% CYP51G1 10 0.52% CYP90D1 10 0.52% TPS 9 0.47% F5H/CYP84A 8 0.42% ROT3/CYP90C1 8 0.42% SMO1/SMO2 8 0.42% CNMT 7 0.37% GES 7 0.37% TAT 7 0.37% COR 6 0.31% ANS/LDOX 6 0.31% SGD 5 0.26% PMT 5 0.26% CPR 5 0.26% GGPPS 5 0.26% DXS 5 0.26% AACT 5 0.26% CYP80B1 4 0.21% NCS 4 0.21% 8HGO 4 0.21% 7DLH 4 0.21% ANR 4 0.21% CCR 4 0.21% SQE 4 0.21% MVK 4 0.21% ADC 3 0.16% CCoAOMT 3 0.16% SQS/FDFT1 3 0.16% MCT/IspD 3 0.16% FPPS 3 0.16% ISY 2 0.1% TYDC_DDC 2 0.1% CYP80F1 2 0.1% MPO 2 0.1% XMT_MXMT_DXMT 2 0.1% HPPR 2 0.1% DWF1 2 0.1% DWF5 2 0.1% DET2 2 0.1% IDI 2 0.1% HMGS 2 0.1% PMK 2 0.1% ODC 1 0.05% TDC 1 0.05% 6OMT_4OMT_SOMT 1 0.05% DFR 1 0.05% FLS 1 0.05% HYD1 1 0.05% DWF7 1 0.05% CPI1 1 0.05% FK 1 0.05% HMGR 1 0.05% CMK/IspE 1 0.05% HDS/IspG 1 0.05% HDR/IspH 1 0.05% MVD 1 0.05% MDS/IspF 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 191 12 POD (94) View species results
Terpenoid pathway 141 20 BAHD (47) View species results
Alkaloid pathway 139 17 PYKS (28) View species results
Flavonoid pathway 81 9 CHS (31) View species results
Rosmarinic acid pathway 76 7 C4H (40) View species results
Steroid pathway 51 13 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 872 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 131 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
Haplomitrium10265640013580 Rosmarinic Acid RAS low borderline
Haplomitrium10270350014300 Rosmarinic Acid RAS low borderline
Haplomitrium10440023110 Rosmarinic Acid RAS low borderline
Haplomitrium10587500035530 Rosmarinic Acid RAS low borderline
Haplomitrium10619280038330 Rosmarinic Acid RAS low borderline
Haplomitrium10744620054420 Rosmarinic Acid RAS low borderline
Haplomitrium10745500054430 Rosmarinic Acid RAS medium pass
Haplomitrium10819030067240 Rosmarinic Acid RAS medium pass
Haplomitrium10819700067530 Rosmarinic Acid RAS low borderline
Haplomitrium10850970073960 Rosmarinic Acid RAS low borderline
Haplomitrium10866230078050 Rosmarinic Acid RAS low borderline
Haplomitrium10926580099980 Rosmarinic Acid RAS medium pass
Haplomitrium10959670116370 Rosmarinic Acid RAS medium pass
Haplomitrium10963580118280 Rosmarinic Acid RAS medium pass
Haplomitrium10965420119320 Rosmarinic Acid RAS low borderline
Haplomitrium11006470142360 Rosmarinic Acid RAS low borderline
Haplomitrium11019150149430 Rosmarinic Acid RAS low borderline
Haplomitrium11058670169240 Rosmarinic Acid RAS low borderline
Haplomitrium11058990169360 Rosmarinic Acid RAS low borderline
Haplomitrium11065030171570 Rosmarinic Acid RAS low borderline
Haplomitrium7167690228600 Rosmarinic Acid RAS low borderline
Haplomitrium8010236530 Rosmarinic Acid RAS medium pass
Haplomitrium9403540249700 Rosmarinic Acid RAS medium pass
Haplomitrium9679020254970 Rosmarinic Acid RAS low borderline