Haplomitrium (haplomitrium)
Imported from atlas release summary for Haplomitrium.
679
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
679
Candidate Genes
C4H
9.19%
C3'H/CYP98A
6.67%
CYP76
5.51%
POD
5.25%
IFS
4.72%
BAHD
4.72%
STR
3.15%
4CL
2.99%
Other Families
57.8%
More Families (95)
T3O
56
2.94%
NMT
54
2.83%
BR6OX2/CYP85A2
49
2.57%
F3H
48
2.52%
H6H
46
2.41%
DWF4/CYP90B1
44
2.31%
PYKS
41
2.15%
CAS
40
2.1%
PAL
39
2.05%
CHS
33
1.73%
SLS
24
1.26%
RAS
24
1.26%
SMT1/SMT2/SMT3
24
1.26%
IO
23
1.21%
G8O/G8H
22
1.15%
IFR
22
1.15%
F3'H/CYP75B
22
1.15%
COMT
19
1.0%
F3'5'H/CYP75A
18
0.94%
CYP71
18
0.94%
HCT
17
0.89%
LAMT
15
0.79%
7DLGT
15
0.79%
T16H
15
0.79%
GS
15
0.79%
UFGT
15
0.79%
TRI/TRII
14
0.73%
CODM/T6ODM
14
0.73%
UGT
14
0.73%
CYP719
13
0.68%
16OMT
13
0.68%
CSE
13
0.68%
BR6OX1/CYP85A1
13
0.68%
FNS
12
0.63%
CPD/CYP90A1
12
0.63%
LAC
11
0.58%
CAD
11
0.58%
CYP51G1
10
0.52%
CYP90D1
10
0.52%
TPS
9
0.47%
F5H/CYP84A
8
0.42%
ROT3/CYP90C1
8
0.42%
SMO1/SMO2
8
0.42%
CNMT
7
0.37%
GES
7
0.37%
TAT
7
0.37%
COR
6
0.31%
ANS/LDOX
6
0.31%
SGD
5
0.26%
PMT
5
0.26%
CPR
5
0.26%
GGPPS
5
0.26%
DXS
5
0.26%
AACT
5
0.26%
CYP80B1
4
0.21%
NCS
4
0.21%
8HGO
4
0.21%
7DLH
4
0.21%
ANR
4
0.21%
CCR
4
0.21%
SQE
4
0.21%
MVK
4
0.21%
ADC
3
0.16%
CCoAOMT
3
0.16%
SQS/FDFT1
3
0.16%
MCT/IspD
3
0.16%
FPPS
3
0.16%
ISY
2
0.1%
TYDC_DDC
2
0.1%
CYP80F1
2
0.1%
MPO
2
0.1%
XMT_MXMT_DXMT
2
0.1%
HPPR
2
0.1%
DWF1
2
0.1%
DWF5
2
0.1%
DET2
2
0.1%
IDI
2
0.1%
HMGS
2
0.1%
PMK
2
0.1%
ODC
1
0.05%
TDC
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
DFR
1
0.05%
FLS
1
0.05%
HYD1
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
FK
1
0.05%
HMGR
1
0.05%
CMK/IspE
1
0.05%
HDS/IspG
1
0.05%
HDR/IspH
1
0.05%
MVD
1
0.05%
MDS/IspF
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 191 | 12 | POD (94) | View species results |
| Terpenoid pathway | 141 | 20 | BAHD (47) | View species results |
| Alkaloid pathway | 139 | 17 | PYKS (28) | View species results |
| Flavonoid pathway | 81 | 9 | CHS (31) | View species results |
| Rosmarinic acid pathway | 76 | 7 | C4H (40) | View species results |
| Steroid pathway | 51 | 13 | CAS (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 872 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 131 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Haplomitrium10938090105600 | Alkaloid | ISY | medium | pass |
| Haplomitrium10235180010700 | Alkaloid | LAMT | medium | pass |
| Haplomitrium10539450032400 | Alkaloid | LAMT | low | borderline |
| Haplomitrium10622320038640 | Alkaloid | LAMT | medium | pass |
| Haplomitrium10720240050300 | Alkaloid | LAMT | medium | borderline |
| Haplomitrium10869890079260 | Alkaloid | LAMT | low | borderline |
| Haplomitrium10873150080770 | Alkaloid | LAMT | medium | borderline |
| Haplomitrium10956910114420 | Alkaloid | LAMT | low | borderline |
| Haplomitrium11017060148000 | Alkaloid | LAMT | medium | pass |
| Haplomitrium11020750149990 | Alkaloid | LAMT | medium | borderline |
| Haplomitrium11082610177660 | Alkaloid | LAMT | low | borderline |
| Haplomitrium18720203020 | Alkaloid | LAMT | low | borderline |
| Haplomitrium23460207680 | Alkaloid | LAMT | low | borderline |
| Haplomitrium7286070229950 | Alkaloid | LAMT | low | borderline |
| Haplomitrium7620231260 | Alkaloid | LAMT | medium | pass |
| Haplomitrium9774820260350 | Alkaloid | LAMT | medium | pass |
| Haplomitrium10852950074540 | Alkaloid | MPO | medium | pass |
| Haplomitrium10906620091300 | Alkaloid | MPO | medium | pass |
| Haplomitrium10273870015040 | Alkaloid | NCS | medium | borderline |
| Haplomitrium10838560071360 | Alkaloid | NCS | medium | borderline |
| Haplomitrium7781630236130 | Alkaloid | NCS | low | borderline |
| Haplomitrium8440241990 | Alkaloid | NCS | medium | borderline |
| Haplomitrium10250300012340 | Alkaloid | NMT | medium | pass |
| Haplomitrium10377320019160 | Alkaloid | NMT | medium | pass |
| Haplomitrium10437500022710 | Alkaloid | NMT | low | borderline |
| Haplomitrium10519660029830 | Alkaloid | NMT | medium | pass |
| Haplomitrium10520610030010 | Alkaloid | NMT | medium | borderline |
| Haplomitrium10530030710 | Alkaloid | NMT | medium | pass |
| Haplomitrium10543380033180 | Alkaloid | NMT | medium | pass |
| Haplomitrium10611520037560 | Alkaloid | NMT | low | borderline |
| Haplomitrium10615870038100 | Alkaloid | NMT | medium | pass |
| Haplomitrium10753030055360 | Alkaloid | NMT | low | borderline |
| Haplomitrium10758980056380 | Alkaloid | NMT | low | borderline |
| Haplomitrium10769410058260 | Alkaloid | NMT | medium | borderline |
| Haplomitrium10828080068830 | Alkaloid | NMT | low | borderline |
| Haplomitrium10831260069670 | Alkaloid | NMT | medium | borderline |
| Haplomitrium10831410069750 | Alkaloid | NMT | medium | pass |
| Haplomitrium10862940077440 | Alkaloid | NMT | medium | pass |
| Haplomitrium10909400092200 | Alkaloid | NMT | medium | pass |
| Haplomitrium10913140093780 | Alkaloid | NMT | medium | pass |
| Haplomitrium10930690102480 | Alkaloid | NMT | low | borderline |
| Haplomitrium10935380103680 | Alkaloid | NMT | low | borderline |
| Haplomitrium10935830104220 | Alkaloid | NMT | medium | pass |
| Haplomitrium10943220107180 | Alkaloid | NMT | medium | borderline |
| Haplomitrium10956060113950 | Alkaloid | NMT | medium | borderline |
| Haplomitrium10965920119580 | Alkaloid | NMT | medium | pass |
| Haplomitrium10977800127230 | Alkaloid | NMT | medium | pass |
| Haplomitrium10978640127610 | Alkaloid | NMT | low | borderline |
| Haplomitrium10985300130330 | Alkaloid | NMT | low | borderline |
| Haplomitrium10988760132390 | Alkaloid | NMT | low | borderline |