PlantSME Plant secondary metabolism enzyme database

Hirschfeldia incana (hirschfeldia_incana)

Imported from atlas release summary for Hirschfeldia incana.

1517
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.81% Phenylpropanoid pathway 23.73% Alkaloid pathway 20.57% Flavonoid pathway 12.66% Rosmarinic acid pathway 8.17% Steroid pathway 6.06%
Family Distribution
BAHD 6.67% C3'H/CYP98A 5.22% POD 5.19% C4H 4.91% 4CL 4.19% F3H 3.88% UGT 3.74% UFGT 3.68%
Other Families 62.53%
More Families (95)
7DLGT 130 3.63% CYP76 120 3.35% IFS 113 3.15% T3O 102 2.85% NMT 94 2.62% CODM/T6ODM 84 2.34% STR 74 2.06% DWF4/CYP90B1 71 1.98% H6H 60 1.67% BR6OX2/CYP85A2 57 1.59% CYP71 53 1.48% F3'H/CYP75B 48 1.34% SGD 47 1.31% CSE 47 1.31% SMT1/SMT2/SMT3 47 1.31% CAD 46 1.28% PYKS 45 1.26% IFR 44 1.23% TRI/TRII 42 1.17% BBE 35 0.98% LAC 35 0.98% RAS 34 0.95% COMT 33 0.92% ANR 31 0.86% CAS 31 0.86% LAMT 30 0.84% T16H 30 0.84% 16OMT 26 0.73% GS 26 0.73% TAT 26 0.73% HCT 25 0.7% IO 23 0.64% F3'5'H/CYP75A 22 0.61% CCR 22 0.61% CYP90D1 22 0.61% PAL 21 0.59% GES 18 0.5% 8HGO 18 0.5% TPS 18 0.5% FNS 17 0.47% CPD/CYP90A1 16 0.45% FPPS 16 0.45% ANS/LDOX 15 0.42% NCS 14 0.39% PMT 14 0.39% SLS 14 0.39% G8O/G8H 13 0.36% CYP51G1 13 0.36% COR 12 0.33% F5H/CYP84A 12 0.33% CPR 12 0.33% CCoAOMT 11 0.31% BR6OX1/CYP85A1 11 0.31% SQE 11 0.31% GGPPS 11 0.31% AACT 11 0.31% 7DLH 9 0.25% CNMT 9 0.25% SQS/FDFT1 9 0.25% CYP719 8 0.22% CHS 8 0.22% TDC 7 0.2% MVK 7 0.2% TYDC_DDC 6 0.17% MPO 6 0.17% DET2 6 0.17% ROT3/CYP90C1 6 0.17% MVD 6 0.17% ISY 5 0.14% ADC 5 0.14% CHI 5 0.14% DFR 5 0.14% HPPR 5 0.14% SMO1/SMO2 5 0.14% DWF7 5 0.14% MCT/IspD 5 0.14% HMGR 4 0.11% IDI 4 0.11% DXS 4 0.11% CYP80B1 3 0.08% CYP80F1 2 0.06% XMT_MXMT_DXMT 2 0.06% DWF1 2 0.06% FK 2 0.06% DWF5 2 0.06% CPI1 2 0.06% HMGS 2 0.06% MDS/IspF 2 0.06% CMK/IspE 2 0.06% HDR/IspH 2 0.06% DXR 2 0.06% FLS 1 0.03% HYD1 1 0.03% HDS/IspG 1 0.03% PMK 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 437 19 BAHD (192) View species results
Phenylpropanoid pathway 360 11 POD (175) View species results
Alkaloid pathway 312 17 7DLGT (52) View species results
Flavonoid pathway 192 10 UFGT (127) View species results
Rosmarinic acid pathway 124 7 C4H (42) View species results
Steroid pathway 92 11 CAS (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1131 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 298 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: MPO
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Gene Pathway Family Confidence Status
hirschfeldia_incana_HINC_NIJ_V1_G0054240.1 Alkaloid MPO high pass
hirschfeldia_incana_HINC_NIJ_V1_G0057030.1 Alkaloid MPO high pass
hirschfeldia_incana_HINC_NIJ_V1_G0069040.1 Alkaloid MPO medium pass
hirschfeldia_incana_HINC_NIJ_V1_G0204150.1 Alkaloid MPO medium pass
hirschfeldia_incana_HINC_NIJ_V1_G0285650.1 Alkaloid MPO medium pass
hirschfeldia_incana_HINC_NIJ_V1_G0289680.1 Alkaloid MPO medium pass