PlantSME Plant secondary metabolism enzyme database

Juglans microcarpa x regia (juglans_microcarpa_x_regia)

/

Imported from atlas release summary for Juglans microcarpa x regia.

2105
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.7% Alkaloid pathway 24.09% Phenylpropanoid pathway 20.76% Flavonoid pathway 11.45% Steroid pathway 8.46% Rosmarinic acid pathway 7.55%
Family Distribution
C3'H/CYP98A 5.78% BAHD 5.61% C4H 5.57% 4CL 5.17% POD 4.03% IFS 3.79% CYP76 3.67% NMT 3.63%
Other Families 62.75%
More Families (95)
T3O 165 3.34% UGT 152 3.08% UFGT 142 2.88% 7DLGT 140 2.84% F3H 127 2.57% DWF4/CYP90B1 103 2.09% CAS 100 2.03% CAD 96 1.95% BR6OX2/CYP85A2 89 1.8% STR 85 1.72% CODM/T6ODM 82 1.66% F3'H/CYP75B 77 1.56% TRI/TRII 71 1.44% SMT1/SMT2/SMT3 71 1.44% SGD 63 1.28% CYP71 61 1.24% IFR 58 1.18% LAC 53 1.07% H6H 52 1.05% GS 51 1.03% GES 50 1.01% TPS 50 1.01% COMT 47 0.95% CYP90D1 47 0.95% PYKS 45 0.91% HCT 45 0.91% CSE 45 0.91% IO 38 0.77% PMT 37 0.75% RAS 36 0.73% ANR 34 0.69% TAT 32 0.65% CNMT 30 0.61% 16OMT 29 0.59% FNS 29 0.59% T16H 27 0.55% BBE 27 0.55% NCS 26 0.53% CPD/CYP90A1 26 0.53% 8HGO 24 0.49% SLS 24 0.49% LAMT 24 0.49% 7DLH 23 0.47% COR 23 0.47% CCR 23 0.47% BR6OX1/CYP85A1 23 0.47% PAL 21 0.43% G8O/G8H 20 0.41% CPR 19 0.39% F3'5'H/CYP75A 18 0.36% SQS/FDFT1 17 0.34% FPPS 16 0.32% F5H/CYP84A 14 0.28% ROT3/CYP90C1 14 0.28% CCoAOMT 13 0.26% CYP719 12 0.24% CHS 12 0.24% CYP51G1 12 0.24% DXS 12 0.24% GGPPS 11 0.22% MVD 11 0.22% AACT 11 0.22% TYDC_DDC 9 0.18% ANS/LDOX 9 0.18% DFR 9 0.18% SQE 9 0.18% MVK 9 0.18% MPO 8 0.16% ISY 8 0.16% TDC 8 0.16% FLS 8 0.16% SMO1/SMO2 7 0.14% DET2 7 0.14% HDS/IspG 7 0.14% CHI 6 0.12% DWF1 6 0.12% PMK 5 0.1% HMGR 4 0.08% MCT/IspD 4 0.08% CYP80B1 3 0.06% HPPR 3 0.06% CPI1 3 0.06% HYD1 3 0.06% DXR 3 0.06% HMGS 3 0.06% CMK/IspE 3 0.06% IDI 3 0.06% HDR/IspH 3 0.06% ADC 2 0.04% DWF5 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 19 BAHD (233) View species results
Alkaloid pathway 507 21 NMT (109) View species results
Phenylpropanoid pathway 437 11 POD (193) View species results
Flavonoid pathway 241 9 UFGT (141) View species results
Steroid pathway 178 12 CAS (88) View species results
Rosmarinic acid pathway 159 7 C4H (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1725 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 358 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMO1/SMO2
Reset
Gene Pathway Family Confidence Status Best Target
juglans_microcarpa_x_regia_XP_040988094.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00002__sp_Q8L7W5_SMO11_ARATH
juglans_microcarpa_x_regia_XP_040990362.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00002__sp_Q8L7W5_SMO11_ARATH
juglans_microcarpa_x_regia_XP_040992192.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
juglans_microcarpa_x_regia_XP_040992193.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
juglans_microcarpa_x_regia_XP_040993995.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
juglans_microcarpa_x_regia_XP_040993996.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
juglans_microcarpa_x_regia_XP_040993997.1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH