PlantSME Plant secondary metabolism enzyme database

Jungermannia erectum (jungermannia_erectum)

Imported from atlas release summary for Jungermannia erectum.

509
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.95% Phenylpropanoid pathway 23.58% Alkaloid pathway 20.43% Flavonoid pathway 14.34% Rosmarinic acid pathway 9.82% Steroid pathway 6.88%
Family Distribution
C4H 7.12% NMT 5.86% BAHD 5.79% 4CL 4.9% C3'H/CYP98A 4.53% POD 4.23% CYP76 4.15% STR 3.56%
Other Families 59.87%
More Families (94)
F3H 32 2.37% BR6OX2/CYP85A2 32 2.37% UGT 32 2.37% IFR 31 2.3% UFGT 30 2.23% 7DLGT 29 2.15% IFS 29 2.15% T3O 26 1.93% GS 24 1.78% PAL 24 1.78% F3'H/CYP75B 21 1.56% COMT 21 1.56% PYKS 19 1.41% H6H 18 1.34% SMT1/SMT2/SMT3 18 1.34% TRI/TRII 17 1.26% DWF4/CYP90B1 17 1.26% RAS 16 1.19% CHS 15 1.11% CSE 15 1.11% CAD 15 1.11% IO 14 1.04% HCT 13 0.96% CODM/T6ODM 12 0.89% CYP719 11 0.82% F3'5'H/CYP75A 11 0.82% BR6OX1/CYP85A1 11 0.82% CAS 10 0.74% CYP71 10 0.74% T16H 9 0.67% NCS 8 0.59% FNS 8 0.59% GGPPS 8 0.59% CNMT 7 0.52% COR 7 0.52% ANR 7 0.52% CCR 7 0.52% CPD/CYP90A1 7 0.52% CYP80B1 6 0.45% PMT 6 0.45% SGD 6 0.45% GES 6 0.45% SLS 6 0.45% LAC 6 0.45% CYP51G1 6 0.45% TPS 6 0.45% 16OMT 5 0.37% G8O/G8H 5 0.37% CYP90D1 5 0.37% SMO1/SMO2 5 0.37% 8HGO 4 0.3% DFR 4 0.3% CPR 4 0.3% SQE 4 0.3% DXS 4 0.3% AACT 4 0.3% TDC 3 0.22% ADC 3 0.22% LAMT 3 0.22% ISY 3 0.22% CHI 3 0.22% ANS/LDOX 3 0.22% F5H/CYP84A 3 0.22% HPPR 3 0.22% SQS/FDFT1 3 0.22% DET2 3 0.22% BBE 2 0.15% 6OMT_4OMT_SOMT 2 0.15% MPO 2 0.15% FLS 2 0.15% CCoAOMT 2 0.15% TAT 2 0.15% DWF1 2 0.15% DWF7 2 0.15% DXR 2 0.15% MVK 2 0.15% IDI 2 0.15% HMGS 2 0.15% HMGR 2 0.15% FPPS 2 0.15% MVD 2 0.15% MCT/IspD 2 0.15% 7DLH 1 0.07% TYDC_DDC 1 0.07% HYD1 1 0.07% CPI1 1 0.07% FK 1 0.07% ROT3/CYP90C1 1 0.07% DWF5 1 0.07% CMK/IspE 1 0.07% PMK 1 0.07% HDR/IspH 1 0.07% MDS/IspF 1 0.07% HDS/IspG 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 127 19 BAHD (50) View species results
Phenylpropanoid pathway 120 11 POD (52) View species results
Alkaloid pathway 104 16 NMT (15) View species results
Flavonoid pathway 73 9 UFGT (27) View species results
Rosmarinic acid pathway 50 7 C4H (20) View species results
Steroid pathway 35 11 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 444 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 107 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
JereHiC_scaffold_10008000 Alkaloid IO low borderline
JereHiC_scaffold_20071710 Alkaloid IO medium borderline
JereHiC_scaffold_50171060 Alkaloid IO medium borderline
JereHiC_scaffold_60198980 Alkaloid IO medium borderline
JereHiC_scaffold_60201310 Alkaloid IO low borderline
JereHiC_scaffold_70214440 Alkaloid IO medium borderline
JereHiC_scaffold_70216130 Alkaloid IO low borderline
JereHiC_scaffold_80253640 Alkaloid IO medium borderline
JereHiC_scaffold_80257840 Alkaloid IO medium borderline
JereHiC_scaffold_80258040 Alkaloid IO medium borderline
JereHiC_scaffold_80258050 Alkaloid IO high pass
JereHiC_scaffold_80258060 Alkaloid IO high pass
JereHiC_scaffold_80260030 Alkaloid IO high pass
JereHiC_scaffold_90287080 Alkaloid IO medium pass