PlantSME Plant secondary metabolism enzyme database

Lactuca sativa (lactuca_sativa)

Imported from atlas release summary for Lactuca sativa.

3297
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.85% Alkaloid pathway 21.23% Phenylpropanoid pathway 19.59% Flavonoid pathway 11.4% Rosmarinic acid pathway 9.52% Steroid pathway 7.4%
Family Distribution
C4H 6.97% C3'H/CYP98A 6.72% BAHD 5.92% CYP76 4.34% IFS 3.99% T3O 3.88% POD 3.82% 4CL 3.8%
Other Families 60.57%
More Families (96)
UGT 274 3.27% UFGT 262 3.13% 7DLGT 261 3.11% DWF4/CYP90B1 223 2.66% F3H 183 2.18% F3'H/CYP75B 181 2.16% SMT1/SMT2/SMT3 163 1.95% STR 156 1.86% NMT 155 1.85% BR6OX2/CYP85A2 154 1.84% CYP71 134 1.6% CODM/T6ODM 124 1.48% CAS 124 1.48% TRI/TRII 118 1.41% CAD 116 1.38% GES 109 1.3% TPS 109 1.3% H6H 93 1.11% CYP90D1 85 1.01% LAC 81 0.97% CSE 79 0.94% GS 77 0.92% T16H 76 0.91% F3'5'H/CYP75A 75 0.9% TAT 72 0.86% PYKS 66 0.79% SGD 65 0.78% G8O/G8H 63 0.75% BBE 62 0.74% IFR 62 0.74% SLS 59 0.7% 7DLH 53 0.63% NCS 52 0.62% CYP51G1 49 0.58% CPD/CYP90A1 49 0.58% FNS 48 0.57% HCT 47 0.56% IO 46 0.55% COMT 44 0.53% 8HGO 41 0.49% ANS/LDOX 40 0.48% RAS 40 0.48% MPO 37 0.44% F5H/CYP84A 35 0.42% CPR 35 0.42% ANR 32 0.38% PAL 30 0.36% 16OMT 29 0.35% PMT 26 0.31% CCoAOMT 23 0.27% CCR 22 0.26% CYP719 21 0.25% BR6OX1/CYP85A1 21 0.25% CHS 19 0.23% HPPR 19 0.23% FPPS 19 0.23% COR 18 0.21% CYP80B1 16 0.19% CNMT 16 0.19% HDR/IspH 16 0.19% LAMT 15 0.18% DET2 15 0.18% ROT3/CYP90C1 15 0.18% HMGR 15 0.18% TYDC_DDC 14 0.17% SQS/FDFT1 13 0.16% ISY 12 0.14% MVD 12 0.14% AACT 12 0.14% HDS/IspG 10 0.12% GGPPS 10 0.12% SQE 9 0.11% TDC 8 0.1% DFR 8 0.1% FLS 8 0.1% DXS 8 0.1% IDI 8 0.1% MVK 8 0.1% XMT_MXMT_DXMT 6 0.07% CHI 6 0.07% GPPS 6 0.07% SMO1/SMO2 5 0.06% HMGS 5 0.06% PMK 5 0.06% ADC 4 0.05% 6OMT_4OMT_SOMT 4 0.05% FK 4 0.05% MCT/IspD 4 0.05% CPI1 3 0.04% DWF7 3 0.04% DWF1 3 0.04% DXR 3 0.04% CMK/IspE 3 0.04% MDS/IspF 3 0.04% HYD1 2 0.02% DWF5 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1017 19 BAHD (403) View species results
Alkaloid pathway 700 24 7DLGT (155) View species results
Phenylpropanoid pathway 646 11 POD (292) View species results
Flavonoid pathway 376 10 UFGT (249) View species results
Rosmarinic acid pathway 314 7 C4H (138) View species results
Steroid pathway 244 13 SMT1/SMT2/SMT3 (116) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3525 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 583 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
Lsat02G0021260.1 Flavonoid CHI medium pass CHI__00014__sp_Q8LKP9_CFI_SAUME
Lsat04G0051620.1 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Lsat06G0012220.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Lsat08G0004060.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Lsat08G0004060.2 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Lsat09G0021850.1 Flavonoid CHI medium pass CHI__00014__sp_Q8LKP9_CFI_SAUME