Lactuca sativa (lactuca_sativa)
Imported from atlas release summary for Lactuca sativa.
3297
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3297
Candidate Genes
C4H
6.97%
C3'H/CYP98A
6.72%
BAHD
5.92%
CYP76
4.34%
IFS
3.99%
T3O
3.88%
POD
3.82%
4CL
3.8%
Other Families
60.57%
More Families (96)
UGT
274
3.27%
UFGT
262
3.13%
7DLGT
261
3.11%
DWF4/CYP90B1
223
2.66%
F3H
183
2.18%
F3'H/CYP75B
181
2.16%
SMT1/SMT2/SMT3
163
1.95%
STR
156
1.86%
NMT
155
1.85%
BR6OX2/CYP85A2
154
1.84%
CYP71
134
1.6%
CODM/T6ODM
124
1.48%
CAS
124
1.48%
TRI/TRII
118
1.41%
CAD
116
1.38%
GES
109
1.3%
TPS
109
1.3%
H6H
93
1.11%
CYP90D1
85
1.01%
LAC
81
0.97%
CSE
79
0.94%
GS
77
0.92%
T16H
76
0.91%
F3'5'H/CYP75A
75
0.9%
TAT
72
0.86%
PYKS
66
0.79%
SGD
65
0.78%
G8O/G8H
63
0.75%
BBE
62
0.74%
IFR
62
0.74%
SLS
59
0.7%
7DLH
53
0.63%
NCS
52
0.62%
CYP51G1
49
0.58%
CPD/CYP90A1
49
0.58%
FNS
48
0.57%
HCT
47
0.56%
IO
46
0.55%
COMT
44
0.53%
8HGO
41
0.49%
ANS/LDOX
40
0.48%
RAS
40
0.48%
MPO
37
0.44%
F5H/CYP84A
35
0.42%
CPR
35
0.42%
ANR
32
0.38%
PAL
30
0.36%
16OMT
29
0.35%
PMT
26
0.31%
CCoAOMT
23
0.27%
CCR
22
0.26%
CYP719
21
0.25%
BR6OX1/CYP85A1
21
0.25%
CHS
19
0.23%
HPPR
19
0.23%
FPPS
19
0.23%
COR
18
0.21%
CYP80B1
16
0.19%
CNMT
16
0.19%
HDR/IspH
16
0.19%
LAMT
15
0.18%
DET2
15
0.18%
ROT3/CYP90C1
15
0.18%
HMGR
15
0.18%
TYDC_DDC
14
0.17%
SQS/FDFT1
13
0.16%
ISY
12
0.14%
MVD
12
0.14%
AACT
12
0.14%
HDS/IspG
10
0.12%
GGPPS
10
0.12%
SQE
9
0.11%
TDC
8
0.1%
DFR
8
0.1%
FLS
8
0.1%
DXS
8
0.1%
IDI
8
0.1%
MVK
8
0.1%
XMT_MXMT_DXMT
6
0.07%
CHI
6
0.07%
GPPS
6
0.07%
SMO1/SMO2
5
0.06%
HMGS
5
0.06%
PMK
5
0.06%
ADC
4
0.05%
6OMT_4OMT_SOMT
4
0.05%
FK
4
0.05%
MCT/IspD
4
0.05%
CPI1
3
0.04%
DWF7
3
0.04%
DWF1
3
0.04%
DXR
3
0.04%
CMK/IspE
3
0.04%
MDS/IspF
3
0.04%
HYD1
2
0.02%
DWF5
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1017 | 19 | BAHD (403) | View species results |
| Alkaloid pathway | 700 | 24 | 7DLGT (155) | View species results |
| Phenylpropanoid pathway | 646 | 11 | POD (292) | View species results |
| Flavonoid pathway | 376 | 10 | UFGT (249) | View species results |
| Rosmarinic acid pathway | 314 | 7 | C4H (138) | View species results |
| Steroid pathway | 244 | 13 | SMT1/SMT2/SMT3 (116) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 3525 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 583 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Lsat04G0009210.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Lsat04G0009210.2 | Alkaloid | NMT | low | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Lsat04G0009780.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Lsat04G0009780.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Lsat04G0010800.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lsat04G0029900.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Lsat04G0046260.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Lsat04G0049390.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Lsat04G0049390.2 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Lsat04G0052080.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Lsat04G0052080.2 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Lsat05G0000630.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Lsat05G0000630.2 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Lsat05G0002530.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Lsat05G0014060.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Lsat05G0014060.2 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Lsat05G0014480.1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Lsat05G0014480.2 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Lsat05G0016010.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Lsat05G0016010.2 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Lsat05G0016940.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lsat05G0016940.2 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lsat05G0016940.3 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Lsat05G0017270.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Lsat05G0017270.2 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Lsat05G0019720.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Lsat05G0019720.2 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Lsat05G0020600.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Lsat05G0020600.3 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Lsat05G0025550.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Lsat05G0042390.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Lsat05G0042390.2 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Lsat05G0051730.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Lsat05G0051730.2 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Lsat05G0051730.3 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Lsat05G0051770.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Lsat05G0051770.2 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Lsat05G0051770.3 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Lsat06G0008410.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Lsat06G0013590.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Lsat06G0013590.2 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Lsat06G0013590.3 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Lsat06G0016820.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016820.3 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016840.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016840.4 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016880.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016880.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0016880.3 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Lsat06G0017120.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |