PlantSME Plant secondary metabolism enzyme database

Lepidozia reptans (lepidozia_reptans)

Imported from atlas release summary for Lepidozia reptans.

633
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 23.06% Phenylpropanoid pathway 22.91% Alkaloid pathway 20.06% Flavonoid pathway 15.48% Rosmarinic acid pathway 12.48% Steroid pathway 6.0%
Family Distribution
C4H 7.01% BAHD 6.12% C3'H/CYP98A 5.23% 4CL 4.84% CYP76 4.84% POD 3.67% IFS 3.45% NMT 3.17%
Other Families 61.66%
More Families (94)
STR 52 2.89% BR6OX2/CYP85A2 46 2.56% F3H 45 2.5% DWF4/CYP90B1 45 2.5% UGT 43 2.39% T3O 42 2.34% 7DLGT 42 2.34% IFR 40 2.23% UFGT 40 2.23% PAL 36 2.0% GS 33 1.84% COMT 28 1.56% F3'H/CYP75B 27 1.5% H6H 24 1.34% G8O/G8H 24 1.34% CODM/T6ODM 24 1.34% RAS 24 1.34% CAD 21 1.17% HCT 20 1.11% TRI/TRII 19 1.06% IO 17 0.95% T16H 17 0.95% CSE 16 0.89% SMT1/SMT2/SMT3 16 0.89% ANR 15 0.83% F3'5'H/CYP75A 15 0.83% SGD 14 0.78% 16OMT 13 0.72% COR 13 0.72% CAS 13 0.72% PYKS 12 0.67% TPS 12 0.67% CNMT 11 0.61% CCR 11 0.61% CYP71 11 0.61% AACT 10 0.56% SLS 9 0.5% LAMT 8 0.45% NCS 8 0.45% 8HGO 7 0.39% FNS 7 0.39% CHS 7 0.39% LAC 7 0.39% HPPR 7 0.39% SQS/FDFT1 7 0.39% CYP80B1 6 0.33% PMT 6 0.33% GES 6 0.33% DFR 6 0.33% F5H/CYP84A 6 0.33% CPD/CYP90A1 6 0.33% BR6OX1/CYP85A1 6 0.33% GGPPS 6 0.33% CCoAOMT 5 0.28% TAT 5 0.28% CPR 5 0.28% DET2 5 0.28% ISY 4 0.22% 7DLH 4 0.22% CYP90D1 4 0.22% IDI 4 0.22% ADC 3 0.17% CYP719 3 0.17% 6OMT_4OMT_SOMT 3 0.17% ANS/LDOX 3 0.17% CHI 3 0.17% CYP51G1 3 0.17% SMO1/SMO2 3 0.17% DXR 3 0.17% FPPS 3 0.17% DXS 3 0.17% BBE 2 0.11% XMT_MXMT_DXMT 2 0.11% MPO 2 0.11% FLS 2 0.11% DWF7 2 0.11% DWF1 2 0.11% ROT3/CYP90C1 2 0.11% HYD1 2 0.11% SQE 2 0.11% MDS/IspF 2 0.11% MVD 2 0.11% PMK 2 0.11% MVK 2 0.11% TDC 1 0.06% FK 1 0.06% DWF5 1 0.06% CPI1 1 0.06% HDS/IspG 1 0.06% HMGS 1 0.06% MCT/IspD 1 0.06% HMGR 1 0.06% CMK/IspE 1 0.06% HDR/IspH 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 146 19 BAHD (62) View species results
Phenylpropanoid pathway 145 11 POD (60) View species results
Alkaloid pathway 127 17 NMT (21) View species results
Flavonoid pathway 98 10 UFGT (37) View species results
Rosmarinic acid pathway 79 7 C4H (36) View species results
Steroid pathway 38 14 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 662 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 154 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Lrep1681210176630 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Lrep1681210176930 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Lrep1681300178520 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Lrep835560190430 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Lrep837630190620 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Lrep933260194890 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Lrep935270195070 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH