PlantSME Plant secondary metabolism enzyme database

Lithospermum erythrorhizon (lithospermum_erythrorhizon)

Imported from atlas release summary for Lithospermum erythrorhizon.

1560
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.0% Phenylpropanoid pathway 23.21% Alkaloid pathway 19.87% Flavonoid pathway 12.44% Rosmarinic acid pathway 8.78% Steroid pathway 5.71%
Family Distribution
BAHD 7.2% C4H 5.61% 4CL 5.17% C3'H/CYP98A 5.14% POD 3.91% UGT 3.61% UFGT 3.58% 7DLGT 3.5%
Other Families 62.27%
More Families (96)
CYP76 127 3.47% IFS 116 3.17% T3O 112 3.06% F3H 92 2.52% NMT 88 2.41% LAC 71 1.94% DWF4/CYP90B1 71 1.94% STR 67 1.83% F3'H/CYP75B 66 1.81% SMT1/SMT2/SMT3 66 1.81% BR6OX2/CYP85A2 60 1.64% CAD 56 1.53% CODM/T6ODM 53 1.45% PYKS 47 1.29% HCT 47 1.29% CSE 45 1.23% TRI/TRII 44 1.2% RAS 44 1.2% H6H 40 1.09% IFR 40 1.09% CAS 38 1.04% GS 36 0.98% TAT 35 0.96% CYP71 35 0.96% PMT 32 0.88% IO 28 0.77% CYP90D1 28 0.77% 7DLH 27 0.74% F3'5'H/CYP75A 26 0.71% CPD/CYP90A1 26 0.71% F5H/CYP84A 25 0.68% TPS 25 0.68% GES 24 0.66% BBE 23 0.63% G8O/G8H 23 0.63% COMT 22 0.6% ANR 21 0.57% NCS 20 0.55% BR6OX1/CYP85A1 20 0.55% 16OMT 19 0.52% FNS 19 0.52% LAMT 18 0.49% SLS 18 0.49% PAL 18 0.49% CYP51G1 15 0.41% SGD 14 0.38% AACT 14 0.38% T16H 13 0.36% CCR 13 0.36% CPR 13 0.36% CNMT 12 0.33% 8HGO 12 0.33% HMGR 12 0.33% COR 11 0.3% ANS/LDOX 11 0.3% FPPS 11 0.3% MPO 10 0.27% HPPR 9 0.25% SQS/FDFT1 9 0.25% GGPPS 9 0.25% CYP719 8 0.22% DFR 8 0.22% SQE 8 0.22% ADC 6 0.16% TDC 6 0.16% CCoAOMT 6 0.16% DET2 6 0.16% DXS 6 0.16% MVD 6 0.16% ISY 5 0.14% TYDC_DDC 5 0.14% SMO1/SMO2 5 0.14% MVK 5 0.14% CHI 4 0.11% CHS 4 0.11% ROT3/CYP90C1 4 0.11% CYP80B1 3 0.08% 6OMT_4OMT_SOMT 3 0.08% CPI1 3 0.08% DWF5 3 0.08% CMK/IspE 3 0.08% PMK 3 0.08% HDS/IspG 3 0.08% HYD1 2 0.05% DWF1 2 0.05% IDI 2 0.05% DXR 2 0.05% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03% FLS 1 0.03% FK 1 0.03% DWF7 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03% MCT/IspD 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 468 19 BAHD (203) View species results
Phenylpropanoid pathway 362 11 POD (134) View species results
Alkaloid pathway 310 19 7DLGT (65) View species results
Flavonoid pathway 194 10 UFGT (119) View species results
Rosmarinic acid pathway 137 7 4CL (44) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1245 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 354 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
lithospermum_erythrorhizon_LE06407.1 Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
lithospermum_erythrorhizon_LE07282.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE07967.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE08769.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE09851.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
lithospermum_erythrorhizon_LE15267.1 Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
lithospermum_erythrorhizon_LE18303.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE18758.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
lithospermum_erythrorhizon_LE19028.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE21619.1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
lithospermum_erythrorhizon_LE28267.1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
lithospermum_erythrorhizon_LE31042.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
lithospermum_erythrorhizon_LE33981.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY