Lithospermum erythrorhizon (lithospermum_erythrorhizon)
Imported from atlas release summary for Lithospermum erythrorhizon.
1560
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1560
Candidate Genes
BAHD
7.2%
C4H
5.61%
4CL
5.17%
C3'H/CYP98A
5.14%
POD
3.91%
UGT
3.61%
UFGT
3.58%
7DLGT
3.5%
Other Families
62.27%
More Families (96)
CYP76
127
3.47%
IFS
116
3.17%
T3O
112
3.06%
F3H
92
2.52%
NMT
88
2.41%
LAC
71
1.94%
DWF4/CYP90B1
71
1.94%
STR
67
1.83%
F3'H/CYP75B
66
1.81%
SMT1/SMT2/SMT3
66
1.81%
BR6OX2/CYP85A2
60
1.64%
CAD
56
1.53%
CODM/T6ODM
53
1.45%
PYKS
47
1.29%
HCT
47
1.29%
CSE
45
1.23%
TRI/TRII
44
1.2%
RAS
44
1.2%
H6H
40
1.09%
IFR
40
1.09%
CAS
38
1.04%
GS
36
0.98%
TAT
35
0.96%
CYP71
35
0.96%
PMT
32
0.88%
IO
28
0.77%
CYP90D1
28
0.77%
7DLH
27
0.74%
F3'5'H/CYP75A
26
0.71%
CPD/CYP90A1
26
0.71%
F5H/CYP84A
25
0.68%
TPS
25
0.68%
GES
24
0.66%
BBE
23
0.63%
G8O/G8H
23
0.63%
COMT
22
0.6%
ANR
21
0.57%
NCS
20
0.55%
BR6OX1/CYP85A1
20
0.55%
16OMT
19
0.52%
FNS
19
0.52%
LAMT
18
0.49%
SLS
18
0.49%
PAL
18
0.49%
CYP51G1
15
0.41%
SGD
14
0.38%
AACT
14
0.38%
T16H
13
0.36%
CCR
13
0.36%
CPR
13
0.36%
CNMT
12
0.33%
8HGO
12
0.33%
HMGR
12
0.33%
COR
11
0.3%
ANS/LDOX
11
0.3%
FPPS
11
0.3%
MPO
10
0.27%
HPPR
9
0.25%
SQS/FDFT1
9
0.25%
GGPPS
9
0.25%
CYP719
8
0.22%
DFR
8
0.22%
SQE
8
0.22%
ADC
6
0.16%
TDC
6
0.16%
CCoAOMT
6
0.16%
DET2
6
0.16%
DXS
6
0.16%
MVD
6
0.16%
ISY
5
0.14%
TYDC_DDC
5
0.14%
SMO1/SMO2
5
0.14%
MVK
5
0.14%
CHI
4
0.11%
CHS
4
0.11%
ROT3/CYP90C1
4
0.11%
CYP80B1
3
0.08%
6OMT_4OMT_SOMT
3
0.08%
CPI1
3
0.08%
DWF5
3
0.08%
CMK/IspE
3
0.08%
PMK
3
0.08%
HDS/IspG
3
0.08%
HYD1
2
0.05%
DWF1
2
0.05%
IDI
2
0.05%
DXR
2
0.05%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 468 | 19 | BAHD (203) | View species results |
| Phenylpropanoid pathway | 362 | 11 | POD (134) | View species results |
| Alkaloid pathway | 310 | 19 | 7DLGT (65) | View species results |
| Flavonoid pathway | 194 | 10 | UFGT (119) | View species results |
| Rosmarinic acid pathway | 137 | 7 | 4CL (44) | View species results |
| Steroid pathway | 89 | 12 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1245 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 354 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| lithospermum_erythrorhizon_LE03299.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE04234.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE04866.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE05353.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE05586.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE07482.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| lithospermum_erythrorhizon_LE08150.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE08618.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| lithospermum_erythrorhizon_LE08653.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE10197.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| lithospermum_erythrorhizon_LE10941.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE14899.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| lithospermum_erythrorhizon_LE15183.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE15707.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE19630.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE19880.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| lithospermum_erythrorhizon_LE24404.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE29540.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| lithospermum_erythrorhizon_LE30627.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| lithospermum_erythrorhizon_LE31941.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |