Lithospermum erythrorhizon (lithospermum_erythrorhizon)
Imported from atlas release summary for Lithospermum erythrorhizon.
1853
Candidate Protein Records
1560
Pathway-Level Records
3655
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3655
Family-Level Calls
BAHD
7.2%
C4H
5.61%
4CL
5.17%
C3'H/CYP98A
5.14%
POD
3.91%
UGT
3.61%
UFGT
3.58%
7DLGT
3.5%
Other Families
62.27%
More Families (96)
CYP76
127
3.47%
IFS
116
3.17%
T3O
112
3.06%
F3H
92
2.52%
NMT
88
2.41%
LAC
71
1.94%
DWF4/CYP90B1
71
1.94%
STR
67
1.83%
F3'H/CYP75B
66
1.81%
SMT1/SMT2/SMT3
66
1.81%
BR6OX2/CYP85A2
60
1.64%
CAD
56
1.53%
CODM/T6ODM
53
1.45%
PYKS
47
1.29%
HCT
47
1.29%
CSE
45
1.23%
TRI/TRII
44
1.2%
RAS
44
1.2%
H6H
40
1.09%
IFR
40
1.09%
CAS
38
1.04%
GS
36
0.98%
TAT
35
0.96%
CYP71
35
0.96%
PMT
32
0.88%
IO
28
0.77%
CYP90D1
28
0.77%
7DLH
27
0.74%
F3'5'H/CYP75A
26
0.71%
CPD/CYP90A1
26
0.71%
F5H/CYP84A
25
0.68%
TPS
25
0.68%
GES
24
0.66%
BBE
23
0.63%
G8O/G8H
23
0.63%
COMT
22
0.6%
ANR
21
0.57%
NCS
20
0.55%
BR6OX1/CYP85A1
20
0.55%
16OMT
19
0.52%
FNS
19
0.52%
LAMT
18
0.49%
SLS
18
0.49%
PAL
18
0.49%
CYP51G1
15
0.41%
SGD
14
0.38%
AACT
14
0.38%
T16H
13
0.36%
CCR
13
0.36%
CPR
13
0.36%
CNMT
12
0.33%
8HGO
12
0.33%
HMGR
12
0.33%
COR
11
0.3%
ANS/LDOX
11
0.3%
FPPS
11
0.3%
MPO
10
0.27%
HPPR
9
0.25%
SQS/FDFT1
9
0.25%
GGPPS
9
0.25%
CYP719
8
0.22%
DFR
8
0.22%
SQE
8
0.22%
ADC
6
0.16%
TDC
6
0.16%
CCoAOMT
6
0.16%
DET2
6
0.16%
DXS
6
0.16%
MVD
6
0.16%
ISY
5
0.14%
TYDC_DDC
5
0.14%
SMO1/SMO2
5
0.14%
MVK
5
0.14%
CHI
4
0.11%
CHS
4
0.11%
ROT3/CYP90C1
4
0.11%
CYP80B1
3
0.08%
6OMT_4OMT_SOMT
3
0.08%
CPI1
3
0.08%
DWF5
3
0.08%
CMK/IspE
3
0.08%
PMK
3
0.08%
HDS/IspG
3
0.08%
HYD1
2
0.05%
DWF1
2
0.05%
IDI
2
0.05%
DXR
2
0.05%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 468 | 19 | BAHD (203) | View species results |
| Phenylpropanoid pathway | 362 | 11 | POD (134) | View species results |
| Alkaloid pathway | 310 | 19 | 7DLGT (65) | View species results |
| Flavonoid pathway | 194 | 10 | UFGT (119) | View species results |
| Rosmarinic acid pathway | 137 | 7 | 4CL (44) | View species results |
| Steroid pathway | 89 | 12 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1245 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 354 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| lithospermum_erythrorhizon_LE01239.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE03491.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE03563.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE04763.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE05185.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE05878.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE05890.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE05912.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE06881.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE07094.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE11016.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE11361.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE14350.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE15928.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE16267.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE18460.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE20263.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE20670.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE22314.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE24041.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE24787.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE24859.2 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE27220.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE27276.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE27533.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE28554.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE34090.1 | Alkaloid | PMT | low | borderline |
| lithospermum_erythrorhizon_LE35204.1 | Alkaloid | PMT | medium | borderline |
| lithospermum_erythrorhizon_LE35228.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE35365.1 | Alkaloid | PMT | medium | pass |
| lithospermum_erythrorhizon_LE00545.1 | Alkaloid | PYKS | high | pass |
| lithospermum_erythrorhizon_LE01468.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE01976.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE02006.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE03593.1 | Alkaloid | PYKS | high | pass |
| lithospermum_erythrorhizon_LE03597.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE04070.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE04108.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE04172.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE05906.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE05965.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE06190.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE06570.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE06921.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE08158.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE08185.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE08648.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE08765.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE09380.1 | Alkaloid | PYKS | low | borderline |
| lithospermum_erythrorhizon_LE09742.1 | Alkaloid | PYKS | low | borderline |