Mangifera indica (mangifera_indica)
Imported from atlas release summary for Mangifera indica.
1797
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1797
Candidate Genes
C4H
6.7%
BAHD
6.22%
C3'H/CYP98A
4.77%
UGT
4.5%
4CL
3.79%
7DLGT
3.69%
POD
3.62%
UFGT
3.34%
Other Families
63.37%
More Families (95)
CYP76
134
3.19%
IFS
132
3.15%
F3H
116
2.76%
T3O
97
2.31%
NMT
90
2.14%
LAC
81
1.93%
CAD
74
1.76%
DWF4/CYP90B1
71
1.69%
CODM/T6ODM
70
1.67%
STR
69
1.64%
F3'H/CYP75B
68
1.62%
G8O/G8H
66
1.57%
SMT1/SMT2/SMT3
64
1.53%
CAS
63
1.5%
CSE
61
1.45%
TPS
58
1.38%
BR6OX2/CYP85A2
57
1.36%
H6H
55
1.31%
PYKS
54
1.29%
TRI/TRII
52
1.24%
GES
52
1.24%
T16H
48
1.14%
FNS
45
1.07%
F3'5'H/CYP75A
43
1.02%
HCT
41
0.98%
PAL
39
0.93%
IFR
37
0.88%
BBE
35
0.83%
GS
34
0.81%
CYP90D1
33
0.79%
CYP71
31
0.74%
SGD
30
0.71%
PMT
29
0.69%
IO
28
0.67%
7DLH
28
0.67%
CHS
28
0.67%
RAS
28
0.67%
TAT
26
0.62%
NCS
25
0.6%
F5H/CYP84A
25
0.6%
BR6OX1/CYP85A1
25
0.6%
ANR
21
0.5%
COMT
20
0.48%
CNMT
19
0.45%
CCR
19
0.45%
CPD/CYP90A1
19
0.45%
COR
17
0.41%
SLS
17
0.41%
DFR
17
0.41%
LAMT
16
0.38%
8HGO
14
0.33%
ROT3/CYP90C1
13
0.31%
HPPR
12
0.29%
CYP80B1
10
0.24%
CYP719
10
0.24%
16OMT
10
0.24%
GGPPS
10
0.24%
CPR
9
0.21%
SQE
9
0.21%
ANS/LDOX
8
0.19%
CHI
8
0.19%
CYP51G1
8
0.19%
MPO
7
0.17%
TYDC_DDC
7
0.17%
CCoAOMT
7
0.17%
SQS/FDFT1
7
0.17%
FPPS
7
0.17%
ISY
6
0.14%
AACT
6
0.14%
DXS
6
0.14%
MVD
6
0.14%
PMK
6
0.14%
SMO1/SMO2
5
0.12%
DET2
5
0.12%
MVK
5
0.12%
HMGR
5
0.12%
6OMT_4OMT_SOMT
4
0.1%
FLS
4
0.1%
ODC
3
0.07%
CYP80F1
3
0.07%
TDC
3
0.07%
DWF7
3
0.07%
MDS/IspF
3
0.07%
HMGS
3
0.07%
MCT/IspD
3
0.07%
ADC
2
0.05%
FK
2
0.05%
DWF1
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
DXR
2
0.05%
CPI1
1
0.02%
HYD1
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 550 | 19 | BAHD (209) | View species results |
| Alkaloid pathway | 417 | 24 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 373 | 12 | POD (138) | View species results |
| Flavonoid pathway | 229 | 11 | UFGT (122) | View species results |
| Rosmarinic acid pathway | 115 | 7 | 4CL (37) | View species results |
| Steroid pathway | 113 | 14 | CAS (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1447 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 330 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mind01G0003460.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind02G0004950.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Mind02G0005870.1 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Mind02G0014120.1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Mind02G0015000.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind02G0017220.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind03G0012200.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mind03G0012210.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mind03G0017240.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Mind04G0001320.1 | Flavonoid | 4CL | medium | pass | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Mind04G0002780.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Mind04G0006560.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mind04G0009390.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Mind04G0010750.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mind04G0018170.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind04G0021120.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind04G0021150.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind04G0021170.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind04G0021890.1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Mind05G0003450.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Mind06G0001670.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind06G0001710.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind07G0007680.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind07G0010940.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Mind08G0001680.1 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Mind08G0011900.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mind09G0007040.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Mind09G0019120.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mind09G0019570.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Mind09G0020350.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Mind11G0004720.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Mind11G0014420.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mind11G0015900.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mind12G0003550.1 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mind12G0005620.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mind12G0006810.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mind13G0005990.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Mind13G0014140.1 | Flavonoid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Mind14G0004210.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mind15G0000900.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mind15G0003080.1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Mind15G0008630.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mind15G0009460.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind15G0009470.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mind16G0009420.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mind16G0015980.1 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Mind17G0000430.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Mind17G0001530.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Mind17G0004330.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mind18G0009520.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |