PlantSME Plant secondary metabolism enzyme database

Mangifera indica (mangifera_indica)

Imported from atlas release summary for Mangifera indica.

1797
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.61% Alkaloid pathway 23.21% Phenylpropanoid pathway 20.76% Flavonoid pathway 12.74% Rosmarinic acid pathway 6.4% Steroid pathway 6.29%
Family Distribution
C4H 6.7% BAHD 6.22% C3'H/CYP98A 4.77% UGT 4.5% 4CL 3.79% 7DLGT 3.69% POD 3.62% UFGT 3.34%
Other Families 63.37%
More Families (95)
CYP76 134 3.19% IFS 132 3.15% F3H 116 2.76% T3O 97 2.31% NMT 90 2.14% LAC 81 1.93% CAD 74 1.76% DWF4/CYP90B1 71 1.69% CODM/T6ODM 70 1.67% STR 69 1.64% F3'H/CYP75B 68 1.62% G8O/G8H 66 1.57% SMT1/SMT2/SMT3 64 1.53% CAS 63 1.5% CSE 61 1.45% TPS 58 1.38% BR6OX2/CYP85A2 57 1.36% H6H 55 1.31% PYKS 54 1.29% TRI/TRII 52 1.24% GES 52 1.24% T16H 48 1.14% FNS 45 1.07% F3'5'H/CYP75A 43 1.02% HCT 41 0.98% PAL 39 0.93% IFR 37 0.88% BBE 35 0.83% GS 34 0.81% CYP90D1 33 0.79% CYP71 31 0.74% SGD 30 0.71% PMT 29 0.69% IO 28 0.67% 7DLH 28 0.67% CHS 28 0.67% RAS 28 0.67% TAT 26 0.62% NCS 25 0.6% F5H/CYP84A 25 0.6% BR6OX1/CYP85A1 25 0.6% ANR 21 0.5% COMT 20 0.48% CNMT 19 0.45% CCR 19 0.45% CPD/CYP90A1 19 0.45% COR 17 0.41% SLS 17 0.41% DFR 17 0.41% LAMT 16 0.38% 8HGO 14 0.33% ROT3/CYP90C1 13 0.31% HPPR 12 0.29% CYP80B1 10 0.24% CYP719 10 0.24% 16OMT 10 0.24% GGPPS 10 0.24% CPR 9 0.21% SQE 9 0.21% ANS/LDOX 8 0.19% CHI 8 0.19% CYP51G1 8 0.19% MPO 7 0.17% TYDC_DDC 7 0.17% CCoAOMT 7 0.17% SQS/FDFT1 7 0.17% FPPS 7 0.17% ISY 6 0.14% AACT 6 0.14% DXS 6 0.14% MVD 6 0.14% PMK 6 0.14% SMO1/SMO2 5 0.12% DET2 5 0.12% MVK 5 0.12% HMGR 5 0.12% 6OMT_4OMT_SOMT 4 0.1% FLS 4 0.1% ODC 3 0.07% CYP80F1 3 0.07% TDC 3 0.07% DWF7 3 0.07% MDS/IspF 3 0.07% HMGS 3 0.07% MCT/IspD 3 0.07% ADC 2 0.05% FK 2 0.05% DWF1 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% DXR 2 0.05% CPI1 1 0.02% HYD1 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 550 19 BAHD (209) View species results
Alkaloid pathway 417 24 7DLGT (59) View species results
Phenylpropanoid pathway 373 12 POD (138) View species results
Flavonoid pathway 229 11 UFGT (122) View species results
Rosmarinic acid pathway 115 7 4CL (37) View species results
Steroid pathway 113 14 CAS (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1447 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 330 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Mind17G0009720.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Mind18G0008520.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind18G0008530.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind18G0008680.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind18G0010320.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0004030.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0004040.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0006490.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0006500.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0014450.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0016490.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0020900.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind19G0025210.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind20G0000020.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind20G0007710.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Mind20G0008050.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Mind20G0009240.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind20G0009870.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Mind20G0011080.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR