PlantSME Plant secondary metabolism enzyme database

Medicago ruthenica (medicago_ruthenica)

Imported from atlas release summary for Medicago ruthenica.

1906
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.01% Alkaloid pathway 22.77% Phenylpropanoid pathway 20.51% Flavonoid pathway 14.9% Rosmarinic acid pathway 7.87% Steroid pathway 4.93%
Family Distribution
C4H 6.41% C3'H/CYP98A 6.0% UGT 5.18% BAHD 4.97% 7DLGT 4.7% UFGT 4.49% IFS 3.97% POD 3.86%
Other Families 60.41%
More Families (96)
CYP76 181 3.78% 4CL 156 3.26% T3O 155 3.24% F3H 145 3.03% DWF4/CYP90B1 104 2.17% NMT 101 2.11% F3'H/CYP75B 98 2.05% BR6OX2/CYP85A2 92 1.92% CODM/T6ODM 86 1.8% STR 78 1.63% H6H 73 1.52% SMT1/SMT2/SMT3 68 1.42% CYP71 59 1.23% CAD 54 1.13% TRI/TRII 53 1.11% CSE 53 1.11% G8O/G8H 50 1.04% SGD 49 1.02% CAS 49 1.02% COMT 45 0.94% LAC 43 0.9% PYKS 42 0.88% HCT 38 0.79% RAS 38 0.79% 7DLH 37 0.77% BBE 37 0.77% T16H 36 0.75% CYP90D1 36 0.75% IFR 34 0.71% GS 33 0.69% PMT 33 0.69% 16OMT 32 0.67% F5H/CYP84A 32 0.67% ANR 31 0.65% TPS 30 0.63% SLS 28 0.58% GES 27 0.56% FNS 26 0.54% IO 25 0.52% COR 25 0.52% CYP51G1 25 0.52% BR6OX1/CYP85A1 25 0.52% NCS 23 0.48% F3'5'H/CYP75A 23 0.48% CCR 22 0.46% CPD/CYP90A1 20 0.42% PAL 18 0.38% ROT3/CYP90C1 18 0.38% ANS/LDOX 17 0.36% DFR 15 0.31% TAT 15 0.31% LAMT 14 0.29% 8HGO 14 0.29% CPR 14 0.29% CNMT 13 0.27% CYP80B1 13 0.27% CHS 13 0.27% ISY 12 0.25% AACT 12 0.25% CYP719 10 0.21% CCoAOMT 10 0.21% FPPS 10 0.21% TDC 9 0.19% HPPR 8 0.17% SQS/FDFT1 8 0.17% MPO 7 0.15% DET2 7 0.15% GGPPS 7 0.15% CHI 6 0.13% DWF1 6 0.13% MVK 6 0.13% MVD 5 0.1% DXS 5 0.1% HMGR 5 0.1% TYDC_DDC 4 0.08% FLS 4 0.08% SQE 4 0.08% ODC 3 0.06% SMO1/SMO2 3 0.06% CMK/IspE 3 0.06% MCT/IspD 3 0.06% HDR/IspH 3 0.06% HDS/IspG 2 0.04% DXR 2 0.04% PMK 2 0.04% HMGS 2 0.04% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DWF7 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 553 20 UGT (239) View species results
Alkaloid pathway 434 22 7DLGT (97) View species results
Phenylpropanoid pathway 391 12 POD (170) View species results
Flavonoid pathway 284 12 UFGT (205) View species results
Rosmarinic acid pathway 150 7 C4H (62) View species results
Steroid pathway 94 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1851 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 314 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Mrut01G0013080.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Mrut02G0013200.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Mrut02G0020570.1 Terpenoid FPPS low borderline FPPS__00004__sp_O22043_GGPP6_ARATH
Mrut02G0043110.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Mrut05G0004940.1 Terpenoid FPPS medium borderline FPPS__00004__sp_O22043_GGPP6_ARATH
Mrut05G0019950.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Mrut05G0019960.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Mrut05G0020010.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Mrut06G0030210.1 Terpenoid FPPS low borderline FPPS__00007__sp_P80042_GGPPS_CAPAN
Mrut08G0033070.1 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA