Medicago ruthenica (medicago_ruthenica)
Imported from atlas release summary for Medicago ruthenica.
1906
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1906
Candidate Genes
C4H
6.41%
C3'H/CYP98A
6.0%
UGT
5.18%
BAHD
4.97%
7DLGT
4.7%
UFGT
4.49%
IFS
3.97%
POD
3.86%
Other Families
60.41%
More Families (96)
CYP76
181
3.78%
4CL
156
3.26%
T3O
155
3.24%
F3H
145
3.03%
DWF4/CYP90B1
104
2.17%
NMT
101
2.11%
F3'H/CYP75B
98
2.05%
BR6OX2/CYP85A2
92
1.92%
CODM/T6ODM
86
1.8%
STR
78
1.63%
H6H
73
1.52%
SMT1/SMT2/SMT3
68
1.42%
CYP71
59
1.23%
CAD
54
1.13%
TRI/TRII
53
1.11%
CSE
53
1.11%
G8O/G8H
50
1.04%
SGD
49
1.02%
CAS
49
1.02%
COMT
45
0.94%
LAC
43
0.9%
PYKS
42
0.88%
HCT
38
0.79%
RAS
38
0.79%
7DLH
37
0.77%
BBE
37
0.77%
T16H
36
0.75%
CYP90D1
36
0.75%
IFR
34
0.71%
GS
33
0.69%
PMT
33
0.69%
16OMT
32
0.67%
F5H/CYP84A
32
0.67%
ANR
31
0.65%
TPS
30
0.63%
SLS
28
0.58%
GES
27
0.56%
FNS
26
0.54%
IO
25
0.52%
COR
25
0.52%
CYP51G1
25
0.52%
BR6OX1/CYP85A1
25
0.52%
NCS
23
0.48%
F3'5'H/CYP75A
23
0.48%
CCR
22
0.46%
CPD/CYP90A1
20
0.42%
PAL
18
0.38%
ROT3/CYP90C1
18
0.38%
ANS/LDOX
17
0.36%
DFR
15
0.31%
TAT
15
0.31%
LAMT
14
0.29%
8HGO
14
0.29%
CPR
14
0.29%
CNMT
13
0.27%
CYP80B1
13
0.27%
CHS
13
0.27%
ISY
12
0.25%
AACT
12
0.25%
CYP719
10
0.21%
CCoAOMT
10
0.21%
FPPS
10
0.21%
TDC
9
0.19%
HPPR
8
0.17%
SQS/FDFT1
8
0.17%
MPO
7
0.15%
DET2
7
0.15%
GGPPS
7
0.15%
CHI
6
0.13%
DWF1
6
0.13%
MVK
6
0.13%
MVD
5
0.1%
DXS
5
0.1%
HMGR
5
0.1%
TYDC_DDC
4
0.08%
FLS
4
0.08%
SQE
4
0.08%
ODC
3
0.06%
SMO1/SMO2
3
0.06%
CMK/IspE
3
0.06%
MCT/IspD
3
0.06%
HDR/IspH
3
0.06%
HDS/IspG
2
0.04%
DXR
2
0.04%
PMK
2
0.04%
HMGS
2
0.04%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DWF7
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 553 | 20 | UGT (239) | View species results |
| Alkaloid pathway | 434 | 22 | 7DLGT (97) | View species results |
| Phenylpropanoid pathway | 391 | 12 | POD (170) | View species results |
| Flavonoid pathway | 284 | 12 | UFGT (205) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (62) | View species results |
| Steroid pathway | 94 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1851 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 314 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mrut05G0035610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut05G0036350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mrut05G0036360.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mrut05G0036370.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Mrut05G0037740.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut05G0041310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut06G0008370.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0006880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0007580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0007590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0009420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0010720.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0011730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0011740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0012000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0016630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0016660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut07G0017440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mrut07G0017450.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mrut07G0051600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut08G0003540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut08G0047430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut08G0052110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrut08G0055490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrutctg15600002440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mrutctg15600002460.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Mrutctg16550006870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mrutctg17250011030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |