PlantSME Plant secondary metabolism enzyme database

Megadenia pygmaea (megadenia_pygmaea)

Imported from atlas release summary for Megadenia pygmaea.

1115
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.31% Phenylpropanoid pathway 22.78% Alkaloid pathway 21.08% Flavonoid pathway 12.47% Rosmarinic acid pathway 7.35% Steroid pathway 6.01%
Family Distribution
BAHD 6.46% C3'H/CYP98A 5.95% C4H 5.59% POD 4.68% 4CL 4.25% CYP76 4.21% UGT 3.52% IFS 3.38%
Other Families 61.95%
More Families (95)
7DLGT 91 3.3% UFGT 91 3.3% NMT 81 2.94% T3O 74 2.69% F3H 70 2.54% DWF4/CYP90B1 64 2.32% BR6OX2/CYP85A2 55 2.0% F3'H/CYP75B 54 1.96% STR 52 1.89% SMT1/SMT2/SMT3 45 1.63% CODM/T6ODM 43 1.56% SGD 41 1.49% CSE 41 1.49% CYP71 41 1.49% H6H 39 1.42% TRI/TRII 31 1.13% IFR 31 1.13% G8O/G8H 28 1.02% PYKS 27 0.98% FNS 27 0.98% IO 26 0.94% CAD 26 0.94% BBE 25 0.91% CYP90D1 25 0.91% PAL 24 0.87% LAC 24 0.87% T16H 23 0.84% SLS 22 0.8% TPS 22 0.8% F3'5'H/CYP75A 21 0.76% F5H/CYP84A 21 0.76% CAS 21 0.76% ANR 20 0.73% CCR 19 0.69% GS 17 0.62% RAS 17 0.62% GES 16 0.58% COMT 16 0.58% TAT 15 0.54% CPD/CYP90A1 15 0.54% 7DLH 14 0.51% 8HGO 11 0.4% BR6OX1/CYP85A1 11 0.4% GGPPS 11 0.4% 16OMT 10 0.36% HCT 10 0.36% ANS/LDOX 9 0.33% FPPS 9 0.33% PMT 8 0.29% NCS 8 0.29% CNMT 8 0.29% COR 8 0.29% LAMT 8 0.29% CPR 8 0.29% CYP51G1 8 0.29% AACT 7 0.25% ROT3/CYP90C1 6 0.22% SMO1/SMO2 6 0.22% SQE 6 0.22% MPO 5 0.18% CYP80B1 5 0.18% CCoAOMT 5 0.18% CYP80F1 4 0.15% XMT_MXMT_DXMT 4 0.15% CYP719 4 0.15% CHS 4 0.15% CHI 4 0.15% DFR 4 0.15% DET2 4 0.15% MVD 4 0.15% CMK/IspE 4 0.15% DXS 4 0.15% DWF5 3 0.11% HYD1 3 0.11% DWF7 3 0.11% SQS/FDFT1 3 0.11% MCT/IspD 3 0.11% MVK 3 0.11% MDS/IspF 3 0.11% TDC 2 0.07% ADC 2 0.07% TYDC_DDC 2 0.07% ISY 2 0.07% HPPR 2 0.07% IDI 2 0.07% HMGR 2 0.07% ODC 1 0.04% FLS 1 0.04% CPI1 1 0.04% FK 1 0.04% DWF1 1 0.04% PMK 1 0.04% HDR/IspH 1 0.04% HDS/IspG 1 0.04% HMGS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 338 18 BAHD (142) View species results
Phenylpropanoid pathway 254 11 POD (116) View species results
Alkaloid pathway 235 19 NMT (50) View species results
Flavonoid pathway 139 9 UFGT (86) View species results
Rosmarinic acid pathway 82 7 C4H (29) View species results
Steroid pathway 67 12 SMT1/SMT2/SMT3 (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1048 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 205 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: MDS/IspF
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Gene Pathway Family Confidence Status Best Target
MpygGWHANWB000000060214620.1 Terpenoid MDS/IspF high pass MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH
MpygGWHANWB000000060220010.1 Terpenoid MDS/IspF low borderline MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH
MpygGWHANWB000003030252290.1 Terpenoid MDS/IspF high pass MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH