Megadenia pygmaea (megadenia_pygmaea)
Imported from atlas release summary for Megadenia pygmaea.
1115
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1115
Candidate Genes
BAHD
6.46%
C3'H/CYP98A
5.95%
C4H
5.59%
POD
4.68%
4CL
4.25%
CYP76
4.21%
UGT
3.52%
IFS
3.38%
Other Families
61.95%
More Families (95)
7DLGT
91
3.3%
UFGT
91
3.3%
NMT
81
2.94%
T3O
74
2.69%
F3H
70
2.54%
DWF4/CYP90B1
64
2.32%
BR6OX2/CYP85A2
55
2.0%
F3'H/CYP75B
54
1.96%
STR
52
1.89%
SMT1/SMT2/SMT3
45
1.63%
CODM/T6ODM
43
1.56%
SGD
41
1.49%
CSE
41
1.49%
CYP71
41
1.49%
H6H
39
1.42%
TRI/TRII
31
1.13%
IFR
31
1.13%
G8O/G8H
28
1.02%
PYKS
27
0.98%
FNS
27
0.98%
IO
26
0.94%
CAD
26
0.94%
BBE
25
0.91%
CYP90D1
25
0.91%
PAL
24
0.87%
LAC
24
0.87%
T16H
23
0.84%
SLS
22
0.8%
TPS
22
0.8%
F3'5'H/CYP75A
21
0.76%
F5H/CYP84A
21
0.76%
CAS
21
0.76%
ANR
20
0.73%
CCR
19
0.69%
GS
17
0.62%
RAS
17
0.62%
GES
16
0.58%
COMT
16
0.58%
TAT
15
0.54%
CPD/CYP90A1
15
0.54%
7DLH
14
0.51%
8HGO
11
0.4%
BR6OX1/CYP85A1
11
0.4%
GGPPS
11
0.4%
16OMT
10
0.36%
HCT
10
0.36%
ANS/LDOX
9
0.33%
FPPS
9
0.33%
PMT
8
0.29%
NCS
8
0.29%
CNMT
8
0.29%
COR
8
0.29%
LAMT
8
0.29%
CPR
8
0.29%
CYP51G1
8
0.29%
AACT
7
0.25%
ROT3/CYP90C1
6
0.22%
SMO1/SMO2
6
0.22%
SQE
6
0.22%
MPO
5
0.18%
CYP80B1
5
0.18%
CCoAOMT
5
0.18%
CYP80F1
4
0.15%
XMT_MXMT_DXMT
4
0.15%
CYP719
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
DFR
4
0.15%
DET2
4
0.15%
MVD
4
0.15%
CMK/IspE
4
0.15%
DXS
4
0.15%
DWF5
3
0.11%
HYD1
3
0.11%
DWF7
3
0.11%
SQS/FDFT1
3
0.11%
MCT/IspD
3
0.11%
MVK
3
0.11%
MDS/IspF
3
0.11%
TDC
2
0.07%
ADC
2
0.07%
TYDC_DDC
2
0.07%
ISY
2
0.07%
HPPR
2
0.07%
IDI
2
0.07%
HMGR
2
0.07%
ODC
1
0.04%
FLS
1
0.04%
CPI1
1
0.04%
FK
1
0.04%
DWF1
1
0.04%
PMK
1
0.04%
HDR/IspH
1
0.04%
HDS/IspG
1
0.04%
HMGS
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 338 | 18 | BAHD (142) | View species results |
| Phenylpropanoid pathway | 254 | 11 | POD (116) | View species results |
| Alkaloid pathway | 235 | 19 | NMT (50) | View species results |
| Flavonoid pathway | 139 | 9 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 82 | 7 | C4H (29) | View species results |
| Steroid pathway | 67 | 12 | SMT1/SMT2/SMT3 (27) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1048 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| MpygGWHANWB000000010019750.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000010024740.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000010035680.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000010039060.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000010040890.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000010041710.1 | Alkaloid | PYKS | medium | pass |
| MpygGWHANWB000000020044220.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000020062540.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000020065830.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000030075900.1 | Alkaloid | PYKS | high | pass |
| MpygGWHANWB000000030076190.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000030076200.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000030076490.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000040110340.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000040118330.1 | Alkaloid | PYKS | high | pass |
| MpygGWHANWB000000040147500.1 | Alkaloid | PYKS | high | pass |
| MpygGWHANWB000000050154550.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000050170930.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000050183750.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060199120.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060202740.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060205180.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060212940.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060213100.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060220020.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060220050.1 | Alkaloid | PYKS | low | borderline |
| MpygGWHANWB000000060220760.1 | Alkaloid | PYKS | low | borderline |