PlantSME Plant secondary metabolism enzyme database

Melaleuca alternifolia (melaleuca_alternifolia)

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Imported from atlas release summary for Melaleuca alternifolia.

2069
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.87% Alkaloid pathway 22.96% Phenylpropanoid pathway 20.3% Flavonoid pathway 13.48% Rosmarinic acid pathway 8.26% Steroid pathway 5.12%
Family Distribution
C4H 6.2% C3'H/CYP98A 6.14% BAHD 5.47% UGT 4.41% 7DLGT 4.25% IFS 4.23% UFGT 4.19% CYP76 4.02%
Other Families 61.1%
More Families (96)
POD 189 3.8% T3O 186 3.74% F3H 117 2.35% 4CL 114 2.29% CAD 111 2.23% DWF4/CYP90B1 111 2.23% GES 101 2.03% STR 94 1.89% F3'H/CYP75B 93 1.87% TPS 92 1.85% BR6OX2/CYP85A2 82 1.65% CAS 81 1.63% NMT 71 1.43% CODM/T6ODM 69 1.39% H6H 65 1.31% LAC 64 1.29% SMT1/SMT2/SMT3 60 1.21% CYP90D1 56 1.13% COMT 52 1.05% HCT 50 1.01% IFR 49 0.99% TRI/TRII 48 0.97% GS 45 0.91% CYP71 45 0.91% IO 44 0.89% CSE 43 0.87% TAT 43 0.87% RAS 41 0.83% G8O/G8H 39 0.78% 16OMT 38 0.76% PMT 35 0.7% PYKS 34 0.68% 7DLH 33 0.66% COR 31 0.62% CPD/CYP90A1 31 0.62% SGD 30 0.6% T16H 30 0.6% LAMT 30 0.6% SLS 30 0.6% BBE 29 0.58% ANR 29 0.58% CYP51G1 29 0.58% FNS 28 0.56% F3'5'H/CYP75A 28 0.56% NCS 24 0.48% CCR 20 0.4% 8HGO 16 0.32% CHS 16 0.32% BR6OX1/CYP85A1 16 0.32% PAL 15 0.3% F5H/CYP84A 14 0.28% SQS/FDFT1 14 0.28% ROT3/CYP90C1 11 0.22% CCoAOMT 10 0.2% CNMT 9 0.18% TYDC_DDC 9 0.18% DFR 9 0.18% GGPPS 9 0.18% AACT 9 0.18% HMGR 9 0.18% CYP719 8 0.16% SQE 8 0.16% MPO 7 0.14% HPPR 7 0.14% ANS/LDOX 6 0.12% HMGS 6 0.12% MVD 5 0.1% CYP80B1 4 0.08% CPR 4 0.08% FPPS 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% SMO1/SMO2 3 0.06% DET2 3 0.06% DXS 3 0.06% XMT_MXMT_DXMT 2 0.04% ADC 2 0.04% TDC 2 0.04% ISY 2 0.04% PMK 2 0.04% MCT/IspD 2 0.04% IDI 2 0.04% MVK 2 0.04% CMK/IspE 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% CPI1 1 0.02% DWF7 1 0.02% FK 1 0.02% DWF1 1 0.02% DWF5 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 618 19 UGT (204) View species results
Alkaloid pathway 475 21 7DLGT (104) View species results
Phenylpropanoid pathway 420 11 POD (176) View species results
Flavonoid pathway 279 10 UFGT (196) View species results
Rosmarinic acid pathway 171 7 C4H (86) View species results
Steroid pathway 106 13 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1914 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 363 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status
melaleuca_alternifolia_scf7180000028325_gene_212 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000028999_gene_190 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000030519_gene_36 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000036283_gene_139 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000036283_gene_141 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000036487_gene_81 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000036512_gene_133 Terpenoid GGPPS medium borderline
melaleuca_alternifolia_scf7180000036750_gene_37 Terpenoid GGPPS low borderline
melaleuca_alternifolia_scf7180000037305_gene_103 Terpenoid GGPPS medium borderline