Melaleuca alternifolia (melaleuca_alternifolia)
/
Imported from atlas release summary for Melaleuca alternifolia.
2069
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2069
Candidate Genes
C4H
6.2%
C3'H/CYP98A
6.14%
BAHD
5.47%
UGT
4.41%
7DLGT
4.25%
IFS
4.23%
UFGT
4.19%
CYP76
4.02%
Other Families
61.1%
More Families (96)
POD
189
3.8%
T3O
186
3.74%
F3H
117
2.35%
4CL
114
2.29%
CAD
111
2.23%
DWF4/CYP90B1
111
2.23%
GES
101
2.03%
STR
94
1.89%
F3'H/CYP75B
93
1.87%
TPS
92
1.85%
BR6OX2/CYP85A2
82
1.65%
CAS
81
1.63%
NMT
71
1.43%
CODM/T6ODM
69
1.39%
H6H
65
1.31%
LAC
64
1.29%
SMT1/SMT2/SMT3
60
1.21%
CYP90D1
56
1.13%
COMT
52
1.05%
HCT
50
1.01%
IFR
49
0.99%
TRI/TRII
48
0.97%
GS
45
0.91%
CYP71
45
0.91%
IO
44
0.89%
CSE
43
0.87%
TAT
43
0.87%
RAS
41
0.83%
G8O/G8H
39
0.78%
16OMT
38
0.76%
PMT
35
0.7%
PYKS
34
0.68%
7DLH
33
0.66%
COR
31
0.62%
CPD/CYP90A1
31
0.62%
SGD
30
0.6%
T16H
30
0.6%
LAMT
30
0.6%
SLS
30
0.6%
BBE
29
0.58%
ANR
29
0.58%
CYP51G1
29
0.58%
FNS
28
0.56%
F3'5'H/CYP75A
28
0.56%
NCS
24
0.48%
CCR
20
0.4%
8HGO
16
0.32%
CHS
16
0.32%
BR6OX1/CYP85A1
16
0.32%
PAL
15
0.3%
F5H/CYP84A
14
0.28%
SQS/FDFT1
14
0.28%
ROT3/CYP90C1
11
0.22%
CCoAOMT
10
0.2%
CNMT
9
0.18%
TYDC_DDC
9
0.18%
DFR
9
0.18%
GGPPS
9
0.18%
AACT
9
0.18%
HMGR
9
0.18%
CYP719
8
0.16%
SQE
8
0.16%
MPO
7
0.14%
HPPR
7
0.14%
ANS/LDOX
6
0.12%
HMGS
6
0.12%
MVD
5
0.1%
CYP80B1
4
0.08%
CPR
4
0.08%
FPPS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
SMO1/SMO2
3
0.06%
DET2
3
0.06%
DXS
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
TDC
2
0.04%
ISY
2
0.04%
PMK
2
0.04%
MCT/IspD
2
0.04%
IDI
2
0.04%
MVK
2
0.04%
CMK/IspE
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
DWF1
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 618 | 19 | UGT (204) | View species results |
| Alkaloid pathway | 475 | 21 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 420 | 11 | POD (176) | View species results |
| Flavonoid pathway | 279 | 10 | UFGT (196) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (86) | View species results |
| Steroid pathway | 106 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1914 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 363 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| melaleuca_alternifolia_scf7180000028325_gene_137 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028382_gene_86 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028398_gene_234 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028515_gene_4 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000028647_gene_132 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028647_gene_134 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028686_gene_43 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000028710_gene_147 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000029102_gene_29 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000029102_gene_89 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000029212_gene_262 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000029487_gene_140 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000030630_gene_20 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000030630_gene_21 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036270_gene_261 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036352_gene_57 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036484_gene_380 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036588_gene_250 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036596_gene_396 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036596_gene_431 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036708_gene_168 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036744_gene_224 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036750_gene_412 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036750_gene_61 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036769_gene_191 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000036811_gene_72 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036811_gene_73 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036870_gene_63 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036870_gene_72 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036926_gene_391 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036926_gene_392 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000036926_gene_394 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000037104_gene_69 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000039061_gene_191 | Rosmarinic Acid | 4CL | medium | pass |
| melaleuca_alternifolia_scf7180000039075_gene_476 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000039105_gene_255 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000039141_gene_1369 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000039141_gene_628 | Rosmarinic Acid | 4CL | low | borderline |
| melaleuca_alternifolia_scf7180000028351_gene_1053 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028351_gene_444 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028351_gene_445 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028351_gene_827 | Rosmarinic Acid | C4H | medium | pass |
| melaleuca_alternifolia_scf7180000028351_gene_828 | Rosmarinic Acid | C4H | medium | pass |
| melaleuca_alternifolia_scf7180000028351_gene_830 | Rosmarinic Acid | C4H | medium | pass |
| melaleuca_alternifolia_scf7180000028351_gene_831 | Rosmarinic Acid | C4H | medium | pass |
| melaleuca_alternifolia_scf7180000028351_gene_946 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028354_gene_32 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028354_gene_85 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028382_gene_255 | Rosmarinic Acid | C4H | low | borderline |
| melaleuca_alternifolia_scf7180000028382_gene_296 | Rosmarinic Acid | C4H | low | borderline |