Melaleuca alternifolia (melaleuca_alternifolia)
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Imported from atlas release summary for Melaleuca alternifolia.
2069
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2069
Candidate Genes
C4H
6.2%
C3'H/CYP98A
6.14%
BAHD
5.47%
UGT
4.41%
7DLGT
4.25%
IFS
4.23%
UFGT
4.19%
CYP76
4.02%
Other Families
61.1%
More Families (96)
POD
189
3.8%
T3O
186
3.74%
F3H
117
2.35%
4CL
114
2.29%
CAD
111
2.23%
DWF4/CYP90B1
111
2.23%
GES
101
2.03%
STR
94
1.89%
F3'H/CYP75B
93
1.87%
TPS
92
1.85%
BR6OX2/CYP85A2
82
1.65%
CAS
81
1.63%
NMT
71
1.43%
CODM/T6ODM
69
1.39%
H6H
65
1.31%
LAC
64
1.29%
SMT1/SMT2/SMT3
60
1.21%
CYP90D1
56
1.13%
COMT
52
1.05%
HCT
50
1.01%
IFR
49
0.99%
TRI/TRII
48
0.97%
GS
45
0.91%
CYP71
45
0.91%
IO
44
0.89%
CSE
43
0.87%
TAT
43
0.87%
RAS
41
0.83%
G8O/G8H
39
0.78%
16OMT
38
0.76%
PMT
35
0.7%
PYKS
34
0.68%
7DLH
33
0.66%
COR
31
0.62%
CPD/CYP90A1
31
0.62%
SGD
30
0.6%
T16H
30
0.6%
LAMT
30
0.6%
SLS
30
0.6%
BBE
29
0.58%
ANR
29
0.58%
CYP51G1
29
0.58%
FNS
28
0.56%
F3'5'H/CYP75A
28
0.56%
NCS
24
0.48%
CCR
20
0.4%
8HGO
16
0.32%
CHS
16
0.32%
BR6OX1/CYP85A1
16
0.32%
PAL
15
0.3%
F5H/CYP84A
14
0.28%
SQS/FDFT1
14
0.28%
ROT3/CYP90C1
11
0.22%
CCoAOMT
10
0.2%
CNMT
9
0.18%
TYDC_DDC
9
0.18%
DFR
9
0.18%
GGPPS
9
0.18%
AACT
9
0.18%
HMGR
9
0.18%
CYP719
8
0.16%
SQE
8
0.16%
MPO
7
0.14%
HPPR
7
0.14%
ANS/LDOX
6
0.12%
HMGS
6
0.12%
MVD
5
0.1%
CYP80B1
4
0.08%
CPR
4
0.08%
FPPS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
SMO1/SMO2
3
0.06%
DET2
3
0.06%
DXS
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
TDC
2
0.04%
ISY
2
0.04%
PMK
2
0.04%
MCT/IspD
2
0.04%
IDI
2
0.04%
MVK
2
0.04%
CMK/IspE
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
DWF1
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 618 | 19 | UGT (204) | View species results |
| Alkaloid pathway | 475 | 21 | 7DLGT (104) | View species results |
| Phenylpropanoid pathway | 420 | 11 | POD (176) | View species results |
| Flavonoid pathway | 279 | 10 | UFGT (196) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (86) | View species results |
| Steroid pathway | 106 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1914 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 363 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| melaleuca_alternifolia_scf7180000029705_gene_2 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000029886_gene_200 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030350_gene_73 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030355_gene_2 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000030390_gene_5 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030390_gene_8 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030395_gene_9 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000030423_gene_19 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030463_gene_128 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030630_gene_177 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000030630_gene_182 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000031712_gene_6 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036263_gene_47 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036270_gene_119 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_188 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_194 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_196 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_197 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_201 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_205 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036282_gene_206 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036283_gene_261 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036283_gene_87 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_310 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_312 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_313 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_316 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_318 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036297_gene_319 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036299_gene_38 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036317_gene_63 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036319_gene_25 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036346_gene_78 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036352_gene_483 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036352_gene_485 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036401_gene_123 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_158 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_159 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_161 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_163 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_167 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036512_gene_209 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036512_gene_632 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036555_gene_258 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036555_gene_273 | Alkaloid | T3O | medium | borderline |
| melaleuca_alternifolia_scf7180000036596_gene_303 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036596_gene_306 | Alkaloid | T3O | medium | pass |
| melaleuca_alternifolia_scf7180000036596_gene_307 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036596_gene_659 | Alkaloid | T3O | low | borderline |
| melaleuca_alternifolia_scf7180000036620_gene_91 | Alkaloid | T3O | medium | pass |