PlantSME Plant secondary metabolism enzyme database

Micromonas commoda (micromonas_commoda)

Imported from atlas release summary for Micromonas commoda.

90
Candidate Genes
78
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 36.67% Alkaloid pathway 26.67% Steroid pathway 15.56% Phenylpropanoid pathway 14.44% Rosmarinic acid pathway 4.44% Flavonoid pathway 2.22%
Family Distribution
NMT 7.9% BAHD 6.38% IFR 5.47% 4CL 5.47% CYP71 5.17% C4H 3.34% POD 3.34% C3'H/CYP98A 3.34%
Other Families 59.57%
More Families (70)
TRI/TRII 10 3.04% IFS 10 3.04% CNMT 8 2.43% STR 8 2.43% H6H 8 2.43% SMT1/SMT2/SMT3 7 2.13% ANR 6 1.82% F3H 6 1.82% CSE 6 1.82% CAS 6 1.82% CYP76 6 1.82% COR 5 1.52% PMT 5 1.52% T3O 5 1.52% DWF4/CYP90B1 5 1.52% GS 4 1.22% CPR 4 1.22% SQS/FDFT1 4 1.22% G8O/G8H 3 0.91% CYP80B1 3 0.91% SLS 3 0.91% DFR 3 0.91% CCR 3 0.91% RAS 3 0.91% CYP90D1 3 0.91% CPD/CYP90A1 3 0.91% AACT 3 0.91% FPPS 3 0.91% GGPPS 3 0.91% GES 2 0.61% MPO 2 0.61% PYKS 2 0.61% F3'H/CYP75B 2 0.61% UFGT 2 0.61% FNS 2 0.61% DET2 2 0.61% MVK 2 0.61% MCT/IspD 2 0.61% 8HGO 1 0.3% ODC 1 0.3% TDC 1 0.3% NCS 1 0.3% T16H 1 0.3% 7DLH 1 0.3% FLS 1 0.3% F3'5'H/CYP75A 1 0.3% CHS 1 0.3% ANS/LDOX 1 0.3% CAD 1 0.3% CCoAOMT 1 0.3% F5H/CYP84A 1 0.3% COMT 1 0.3% TAT 1 0.3% HPPR 1 0.3% FK 1 0.3% BR6OX2/CYP85A2 1 0.3% BR6OX1/CYP85A1 1 0.3% SQE 1 0.3% DWF5 1 0.3% SMO1/SMO2 1 0.3% CPI1 1 0.3% CYP51G1 1 0.3% DXS 1 0.3% MVD 1 0.3% HDR/IspH 1 0.3% DXR 1 0.3% IDI 1 0.3% HDS/IspG 1 0.3% CMK/IspE 1 0.3% UGT 1 0.3%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 33 11 BAHD (13) View species results
Alkaloid pathway 24 8 NMT (7) View species results
Steroid pathway 14 8 CAS (5) View species results
Phenylpropanoid pathway 13 4 POD (10) View species results
Rosmarinic acid pathway 4 2 CPR (3) View species results
Flavonoid pathway 2 1 IFR (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 20 89 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, SLS, T16H, T3O
BAHD/acyltransferase 2 24 BAHD, RAS
Identification Result List
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Gene Pathway Family Confidence Status Best Target
Mcom02G0001330.1 Steroid FK medium borderline FK__00001__sp_Q9LDR4_ERG24_ARATH