Micromonas commoda (micromonas_commoda)
Imported from atlas release summary for Micromonas commoda.
90
Candidate Genes
78
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
90
Candidate Genes
NMT
7.9%
BAHD
6.38%
IFR
5.47%
4CL
5.47%
CYP71
5.17%
C4H
3.34%
POD
3.34%
C3'H/CYP98A
3.34%
Other Families
59.57%
More Families (70)
TRI/TRII
10
3.04%
IFS
10
3.04%
CNMT
8
2.43%
STR
8
2.43%
H6H
8
2.43%
SMT1/SMT2/SMT3
7
2.13%
ANR
6
1.82%
F3H
6
1.82%
CSE
6
1.82%
CAS
6
1.82%
CYP76
6
1.82%
COR
5
1.52%
PMT
5
1.52%
T3O
5
1.52%
DWF4/CYP90B1
5
1.52%
GS
4
1.22%
CPR
4
1.22%
SQS/FDFT1
4
1.22%
G8O/G8H
3
0.91%
CYP80B1
3
0.91%
SLS
3
0.91%
DFR
3
0.91%
CCR
3
0.91%
RAS
3
0.91%
CYP90D1
3
0.91%
CPD/CYP90A1
3
0.91%
AACT
3
0.91%
FPPS
3
0.91%
GGPPS
3
0.91%
GES
2
0.61%
MPO
2
0.61%
PYKS
2
0.61%
F3'H/CYP75B
2
0.61%
UFGT
2
0.61%
FNS
2
0.61%
DET2
2
0.61%
MVK
2
0.61%
MCT/IspD
2
0.61%
8HGO
1
0.3%
ODC
1
0.3%
TDC
1
0.3%
NCS
1
0.3%
T16H
1
0.3%
7DLH
1
0.3%
FLS
1
0.3%
F3'5'H/CYP75A
1
0.3%
CHS
1
0.3%
ANS/LDOX
1
0.3%
CAD
1
0.3%
CCoAOMT
1
0.3%
F5H/CYP84A
1
0.3%
COMT
1
0.3%
TAT
1
0.3%
HPPR
1
0.3%
FK
1
0.3%
BR6OX2/CYP85A2
1
0.3%
BR6OX1/CYP85A1
1
0.3%
SQE
1
0.3%
DWF5
1
0.3%
SMO1/SMO2
1
0.3%
CPI1
1
0.3%
CYP51G1
1
0.3%
DXS
1
0.3%
MVD
1
0.3%
HDR/IspH
1
0.3%
DXR
1
0.3%
IDI
1
0.3%
HDS/IspG
1
0.3%
CMK/IspE
1
0.3%
UGT
1
0.3%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 33 | 11 | BAHD (13) | View species results |
| Alkaloid pathway | 24 | 8 | NMT (7) | View species results |
| Steroid pathway | 14 | 8 | CAS (5) | View species results |
| Phenylpropanoid pathway | 13 | 4 | POD (10) | View species results |
| Rosmarinic acid pathway | 4 | 2 | CPR (3) | View species results |
| Flavonoid pathway | 2 | 1 | IFR (2) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 20 | 89 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, SLS, T16H, T3O |
| BAHD/acyltransferase | 2 | 24 | BAHD, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Mcom01G0003550.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom01G0005480.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom03G0004750.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom06G0001230.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom07G0005080.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom16G0002090.1 | Rosmarinic Acid | 4CL | low | borderline |
| Mcom02G0006920.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom03G0008050.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom04G0001270.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom04G0002170.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom06G0005840.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom08G0004720.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom10G0004830.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom14G0003220.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom16G0001200.1 | Rosmarinic Acid | C4H | low | borderline |
| Mcom01G0006580.1 | Rosmarinic Acid | CPR | medium | pass |
| Mcom10G0002110.1 | Rosmarinic Acid | CPR | medium | pass |
| Mcom12G0002810.1 | Rosmarinic Acid | CPR | medium | pass |
| Mcom16G0000060.1 | Rosmarinic Acid | CPR | low | borderline |
| Mcom02G0004530.1 | Rosmarinic Acid | HPPR | low | borderline |
| Mcom03G0000140.1 | Rosmarinic Acid | RAS | low | borderline |
| Mcom04G0001380.1 | Rosmarinic Acid | RAS | low | borderline |
| Mcom13G0000120.1 | Rosmarinic Acid | RAS | low | borderline |
| Mcom01G0002710.1 | Rosmarinic Acid | TAT | medium | pass |