PlantSME Plant secondary metabolism enzyme database

Mimulus luteus (mimulus_luteus)

Imported from atlas release summary for Mimulus luteus.

1980
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.61% Phenylpropanoid pathway 21.46% Alkaloid pathway 20.71% Flavonoid pathway 14.7% Rosmarinic acid pathway 7.12% Steroid pathway 5.4%
Family Distribution
C4H 6.71% BAHD 6.25% C3'H/CYP98A 5.21% POD 4.48% 4CL 4.16% UGT 4.03% 7DLGT 3.8% UFGT 3.74%
Other Families 61.62%
More Families (96)
CYP76 172 3.27% IFS 157 2.98% NMT 141 2.68% F3H 136 2.58% T3O 135 2.57% F3'H/CYP75B 125 2.38% BR6OX2/CYP85A2 97 1.84% CODM/T6ODM 95 1.81% STR 95 1.81% DWF4/CYP90B1 82 1.56% CAD 76 1.44% TPS 74 1.41% H6H 70 1.33% G8O/G8H 70 1.33% CAS 68 1.29% GES 67 1.27% LAC 67 1.27% SMT1/SMT2/SMT3 62 1.18% 7DLH 58 1.1% CYP71 50 0.95% IFR 49 0.93% CSE 48 0.91% RAS 48 0.91% CPD/CYP90A1 48 0.91% TRI/TRII 45 0.86% BBE 45 0.86% PYKS 43 0.82% HCT 43 0.82% CYP90D1 42 0.8% F5H/CYP84A 40 0.76% TAT 40 0.76% GS 39 0.74% PMT 38 0.72% T16H 35 0.67% F3'5'H/CYP75A 35 0.67% SLS 34 0.65% SGD 34 0.65% FNS 33 0.63% COMT 31 0.59% IO 29 0.55% HMGR 29 0.55% ANR 28 0.53% CCR 26 0.49% NCS 24 0.46% ANS/LDOX 21 0.4% DFR 21 0.4% 8HGO 19 0.36% LAMT 18 0.34% CPR 16 0.3% FPPS 16 0.3% PAL 15 0.29% CCoAOMT 15 0.29% BR6OX1/CYP85A1 15 0.29% GGPPS 15 0.29% COR 13 0.25% CHS 12 0.23% ROT3/CYP90C1 12 0.23% 16OMT 11 0.21% CYP80B1 11 0.21% MPO 11 0.21% CYP80F1 10 0.19% SQS/FDFT1 10 0.19% MVK 10 0.19% DXS 10 0.19% AACT 10 0.19% DET2 9 0.17% CNMT 8 0.15% CYP719 8 0.15% HPPR 8 0.15% CYP51G1 8 0.15% MVD 8 0.15% 6OMT_4OMT_SOMT 7 0.13% ISY 7 0.13% TYDC_DDC 7 0.13% CHI 6 0.11% SQE 6 0.11% SMO1/SMO2 6 0.11% TDC 5 0.1% ADC 5 0.1% PMK 5 0.1% CMK/IspE 5 0.1% FLS 4 0.08% MDS/IspF 4 0.08% IDI 4 0.08% FK 3 0.06% HYD1 3 0.06% DWF7 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% XMT_MXMT_DXMT 2 0.04% CPI1 2 0.04% DWF1 2 0.04% DWF5 2 0.04% HMGS 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 606 20 BAHD (212) View species results
Phenylpropanoid pathway 425 13 POD (194) View species results
Alkaloid pathway 410 24 7DLGT (67) View species results
Flavonoid pathway 291 14 UFGT (185) View species results
Rosmarinic acid pathway 141 7 4CL (52) View species results
Steroid pathway 107 13 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1900 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 420 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
Mlutescaffold_19440142870.1 Alkaloid TYDC_DDC low borderline
Mlutescaffold_20050148530.1 Alkaloid TYDC_DDC medium borderline
Mlutescaffold_21910161440.1 Alkaloid TYDC_DDC medium borderline
Mlutescaffold_24900182830.1 Alkaloid TYDC_DDC medium borderline
Mlutescaffold_3530243240.1 Alkaloid TYDC_DDC medium pass
Mlutescaffold_810420520.1 Alkaloid TYDC_DDC medium borderline
Mlutescaffold_8130421430.1 Alkaloid TYDC_DDC medium borderline