Miscanthus sinensis (miscanthus_sinensis)
Imported from atlas release summary for Miscanthus sinensis.
4537
Candidate Protein Records
3871
Pathway-Level Records
9340
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
9340
Family-Level Calls
C4H
6.0%
BAHD
5.73%
C3'H/CYP98A
5.5%
UGT
4.41%
POD
4.15%
7DLGT
4.1%
UFGT
3.96%
4CL
3.76%
Other Families
62.39%
More Families (98)
CYP76
320
3.43%
T3O
291
3.12%
IFS
279
2.99%
NMT
267
2.86%
F3H
216
2.31%
F3'H/CYP75B
215
2.3%
DWF4/CYP90B1
215
2.3%
BR6OX2/CYP85A2
186
1.99%
STR
159
1.7%
CYP71
159
1.7%
SMT1/SMT2/SMT3
146
1.56%
CAD
125
1.34%
TRI/TRII
121
1.3%
CODM/T6ODM
113
1.21%
CAS
104
1.11%
PMT
100
1.07%
TPS
97
1.04%
SGD
96
1.03%
PYKS
95
1.02%
H6H
95
1.02%
CCR
94
1.01%
ANR
90
0.96%
G8O/G8H
89
0.95%
SLS
86
0.92%
HCT
85
0.91%
GES
84
0.9%
FNS
83
0.89%
RAS
82
0.88%
NCS
79
0.85%
LAC
79
0.85%
IFR
78
0.84%
CSE
73
0.78%
COMT
66
0.71%
T16H
65
0.7%
16OMT
65
0.7%
F5H/CYP84A
63
0.67%
CYP90D1
60
0.64%
F3'5'H/CYP75A
54
0.58%
PAL
54
0.58%
GS
50
0.54%
IO
48
0.51%
CYP51G1
47
0.5%
DFR
46
0.49%
COR
45
0.48%
CHS
44
0.47%
BR6OX1/CYP85A1
40
0.43%
GGPPS
37
0.4%
TAT
35
0.37%
CPD/CYP90A1
33
0.35%
CNMT
32
0.34%
ANS/LDOX
31
0.33%
LAMT
29
0.31%
7DLH
28
0.3%
8HGO
23
0.25%
FPPS
23
0.25%
SQS/FDFT1
20
0.21%
TYDC_DDC
19
0.2%
CYP719
19
0.2%
CCoAOMT
19
0.2%
CPR
18
0.19%
MVK
18
0.19%
CYP80B1
17
0.18%
HPPR
17
0.18%
AACT
16
0.17%
XMT_MXMT_DXMT
15
0.16%
DWF1
15
0.16%
ADC
13
0.14%
BBE
12
0.13%
SMO1/SMO2
12
0.13%
ROT3/CYP90C1
11
0.12%
HMGS
11
0.12%
DXS
11
0.12%
TDC
10
0.11%
MVD
10
0.11%
ISY
9
0.1%
MPO
9
0.1%
ODC
9
0.1%
DET2
8
0.09%
IDI
8
0.09%
CYP80F1
7
0.07%
DWF7
7
0.07%
MCT/IspD
7
0.07%
CHI
6
0.06%
HYD1
6
0.06%
HDS/IspG
6
0.06%
6OMT_4OMT_SOMT
5
0.05%
CPI1
5
0.05%
HMGR
5
0.05%
FLS
4
0.04%
SQE
4
0.04%
DWF5
3
0.03%
PMK
3
0.03%
CMK/IspE
3
0.03%
GPPS
3
0.03%
FK
2
0.02%
HDR/IspH
2
0.02%
DXR
2
0.02%
MDS/IspF
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1110 | 21 | BAHD (401) | View species results |
| Alkaloid pathway | 914 | 23 | 7DLGT (174) | View species results |
| Phenylpropanoid pathway | 782 | 12 | POD (366) | View species results |
| Flavonoid pathway | 522 | 12 | UFGT (337) | View species results |
| Rosmarinic acid pathway | 319 | 7 | C4H (128) | View species results |
| Steroid pathway | 224 | 13 | CAS (83) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3406 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 702 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Msin06G0003400.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0003730.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0007540.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0007550.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0008790.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0019260.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin06G0019270.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin07G0011000.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin07G0023870.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin07G0029870.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin07G0052320.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin08G0010820.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin08G0010820.2 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin08G0010820.3 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin08G0029130.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin08G0030730.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin09G0019530.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin10G0011240.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin11G0001900.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin11G0020480.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin11G0020490.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin12G0001960.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin12G0002280.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin13G0005800.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin14G0006030.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin14G0013270.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin14G0013280.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin15G0004820.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin15G0009680.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin15G0012990.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin15G0015350.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin15G0015350.2 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin16G0004960.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin16G0006570.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin16G0008140.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin17G0001100.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin17G0003960.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin17G0007970.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin17G0008320.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin18G0007060.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin18G0014570.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin18G0014570.2 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin18G0017290.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin18G0017840.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin18G0026020.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin19G0006490.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Msin19G0014540.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin19G0014540.10 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin19G0014540.11 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Msin19G0014540.12 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |