PlantSME Plant secondary metabolism enzyme database

Nelumbo lutea (nelumbo_lutea)

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Imported from atlas release summary for Nelumbo lutea.

1195
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.28% Phenylpropanoid pathway 25.61% Alkaloid pathway 23.26% Flavonoid pathway 11.8% Rosmarinic acid pathway 8.03% Steroid pathway 5.02%
Family Distribution
BAHD 6.49% C4H 5.88% POD 5.54% C3'H/CYP98A 5.09% 4CL 4.64% IFS 4.03% UGT 3.73% NMT 3.13%
Other Families 61.46%
More Families (97)
7DLGT 81 3.05% CYP76 80 3.02% UFGT 76 2.87% T3O 75 2.83% F3H 61 2.3% DWF4/CYP90B1 58 2.19% STR 50 1.89% BR6OX2/CYP85A2 46 1.73% CODM/T6ODM 39 1.47% F3'H/CYP75B 38 1.43% H6H 37 1.4% CAD 36 1.36% CSE 34 1.28% HCT 32 1.21% TRI/TRII 31 1.17% PAL 30 1.13% LAC 30 1.13% SMT1/SMT2/SMT3 30 1.13% IFR 29 1.09% COMT 27 1.02% CYP71 27 1.02% RAS 25 0.94% ANR 24 0.9% T16H 23 0.87% G8O/G8H 23 0.87% SGD 23 0.87% CAS 22 0.83% TPS 22 0.83% PMT 21 0.79% PYKS 21 0.79% 7DLH 20 0.75% NCS 19 0.72% GS 17 0.64% FNS 17 0.64% CCR 17 0.64% BR6OX1/CYP85A1 17 0.64% GES 16 0.6% 8HGO 16 0.6% COR 16 0.6% BBE 14 0.53% IO 14 0.53% F5H/CYP84A 14 0.53% CPD/CYP90A1 14 0.53% TYDC_DDC 13 0.49% ANS/LDOX 13 0.49% CYP90D1 13 0.49% F3'5'H/CYP75A 12 0.45% CYP51G1 12 0.45% LAMT 11 0.41% 16OMT 10 0.38% SLS 9 0.34% ROT3/CYP90C1 9 0.34% TDC 8 0.3% TAT 8 0.3% CYP719 7 0.26% CNMT 7 0.26% CCoAOMT 7 0.26% CPR 7 0.26% CYP80B1 6 0.23% DFR 6 0.23% CHI 6 0.23% 6OMT_4OMT_SOMT 5 0.19% XMT_MXMT_DXMT 5 0.19% SMO1/SMO2 5 0.19% MVK 5 0.19% FPPS 5 0.19% GGPPS 5 0.19% MVD 5 0.19% MPO 4 0.15% ODC 4 0.15% FLS 4 0.15% DET2 4 0.15% ISY 3 0.11% ADC 3 0.11% CHS 3 0.11% DWF1 3 0.11% SQE 3 0.11% PMK 3 0.11% AACT 3 0.11% HDS/IspG 3 0.11% MCT/IspD 3 0.11% HMGR 3 0.11% CYP80F1 2 0.08% HPPR 2 0.08% HYD1 2 0.08% DWF7 2 0.08% SQS/FDFT1 2 0.08% HMGS 2 0.08% IDI 2 0.08% DXS 2 0.08% FK 1 0.04% CPI1 1 0.04% DWF5 1 0.04% MDS/IspF 1 0.04% DXR 1 0.04% HDR/IspH 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 314 19 BAHD (137) View species results
Phenylpropanoid pathway 306 13 POD (141) View species results
Alkaloid pathway 278 21 NMT (57) View species results
Flavonoid pathway 141 13 UFGT (71) View species results
Rosmarinic acid pathway 96 7 4CL (31) View species results
Steroid pathway 60 14 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 917 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 229 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
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Gene Pathway Family Confidence Status Best Target
nelumbo_lutea_NL5g_26820.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
nelumbo_lutea_NL5g_29185.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
nelumbo_lutea_NL6g_31923.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI