PlantSME Plant secondary metabolism enzyme database

Nicotiana sylvestris (nicotiana_sylvestris)

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Imported from atlas release summary for Nicotiana sylvestris.

1879
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.32% Alkaloid pathway 23.42% Phenylpropanoid pathway 20.44% Flavonoid pathway 11.6% Rosmarinic acid pathway 8.3% Steroid pathway 6.92%
Family Distribution
C4H 5.72% C3'H/CYP98A 5.52% BAHD 5.48% POD 4.31% T3O 3.72% UFGT 3.7% 4CL 3.7% UGT 3.7%
Other Families 64.16%
More Families (97)
7DLGT 165 3.63% IFS 163 3.59% CYP76 159 3.5% NMT 157 3.45% F3H 131 2.88% BR6OX2/CYP85A2 99 2.18% F3'H/CYP75B 90 1.98% DWF4/CYP90B1 83 1.83% TPS 82 1.8% STR 74 1.63% CAS 74 1.63% GES 73 1.61% CYP71 73 1.61% CODM/T6ODM 66 1.45% H6H 61 1.34% SMT1/SMT2/SMT3 61 1.34% CAD 57 1.25% SGD 52 1.14% TRI/TRII 49 1.08% LAC 49 1.08% IFR 47 1.03% TAT 46 1.01% CSE 41 0.9% GS 38 0.84% SLS 38 0.84% F5H/CYP84A 38 0.84% RAS 37 0.81% PYKS 36 0.79% HCT 35 0.77% CYP90D1 35 0.77% NCS 29 0.64% T16H 27 0.59% COMT 26 0.57% BBE 25 0.55% CPR 25 0.55% PMT 23 0.51% G8O/G8H 23 0.51% CPD/CYP90A1 23 0.51% CCR 22 0.48% IO 21 0.46% FNS 20 0.44% F3'5'H/CYP75A 20 0.44% CYP51G1 20 0.44% LAMT 19 0.42% AACT 19 0.42% 7DLH 18 0.4% 16OMT 18 0.4% CNMT 17 0.37% ANR 17 0.37% 8HGO 15 0.33% ANS/LDOX 15 0.33% FPPS 15 0.33% CCoAOMT 13 0.29% PAL 12 0.26% SQS/FDFT1 12 0.26% BR6OX1/CYP85A1 12 0.26% GGPPS 12 0.26% DFR 11 0.24% COR 10 0.22% HPPR 10 0.22% ROT3/CYP90C1 10 0.22% DET2 9 0.2% MPO 8 0.18% TDC 8 0.18% DWF1 8 0.18% CYP80B1 7 0.15% CHS 7 0.15% TYDC_DDC 6 0.13% ISY 6 0.13% ODC 5 0.11% SQE 5 0.11% SMO1/SMO2 5 0.11% MVK 5 0.11% CMK/IspE 5 0.11% XMT_MXMT_DXMT 4 0.09% CHI 4 0.09% HYD1 4 0.09% HMGR 4 0.09% DXS 4 0.09% MVD 4 0.09% PMK 4 0.09% HDS/IspG 4 0.09% 6OMT_4OMT_SOMT 3 0.07% CYP719 3 0.07% MCT/IspD 3 0.07% HMGS 3 0.07% HDR/IspH 3 0.07% IDI 3 0.07% ADC 2 0.04% FLS 2 0.04% CPI1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% FK 1 0.02% DWF5 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 551 19 BAHD (197) View species results
Alkaloid pathway 440 23 NMT (84) View species results
Phenylpropanoid pathway 384 11 POD (191) View species results
Flavonoid pathway 218 12 UFGT (145) View species results
Rosmarinic acid pathway 156 7 C4H (62) View species results
Steroid pathway 130 11 CAS (59) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1643 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 321 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
nicotiana_sylvestris_XP_009784771.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009784772.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009788757.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009788758.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009788759.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009793550.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
nicotiana_sylvestris_XP_009793551.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
nicotiana_sylvestris_XP_009793552.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
nicotiana_sylvestris_XP_009795083.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009796773.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
nicotiana_sylvestris_XP_009797030.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
nicotiana_sylvestris_XP_009798564.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH