Nicotiana sylvestris (nicotiana_sylvestris)
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Imported from atlas release summary for Nicotiana sylvestris.
1879
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1879
Candidate Genes
C4H
5.72%
C3'H/CYP98A
5.52%
BAHD
5.48%
POD
4.31%
T3O
3.72%
UFGT
3.7%
4CL
3.7%
UGT
3.7%
Other Families
64.16%
More Families (97)
7DLGT
165
3.63%
IFS
163
3.59%
CYP76
159
3.5%
NMT
157
3.45%
F3H
131
2.88%
BR6OX2/CYP85A2
99
2.18%
F3'H/CYP75B
90
1.98%
DWF4/CYP90B1
83
1.83%
TPS
82
1.8%
STR
74
1.63%
CAS
74
1.63%
GES
73
1.61%
CYP71
73
1.61%
CODM/T6ODM
66
1.45%
H6H
61
1.34%
SMT1/SMT2/SMT3
61
1.34%
CAD
57
1.25%
SGD
52
1.14%
TRI/TRII
49
1.08%
LAC
49
1.08%
IFR
47
1.03%
TAT
46
1.01%
CSE
41
0.9%
GS
38
0.84%
SLS
38
0.84%
F5H/CYP84A
38
0.84%
RAS
37
0.81%
PYKS
36
0.79%
HCT
35
0.77%
CYP90D1
35
0.77%
NCS
29
0.64%
T16H
27
0.59%
COMT
26
0.57%
BBE
25
0.55%
CPR
25
0.55%
PMT
23
0.51%
G8O/G8H
23
0.51%
CPD/CYP90A1
23
0.51%
CCR
22
0.48%
IO
21
0.46%
FNS
20
0.44%
F3'5'H/CYP75A
20
0.44%
CYP51G1
20
0.44%
LAMT
19
0.42%
AACT
19
0.42%
7DLH
18
0.4%
16OMT
18
0.4%
CNMT
17
0.37%
ANR
17
0.37%
8HGO
15
0.33%
ANS/LDOX
15
0.33%
FPPS
15
0.33%
CCoAOMT
13
0.29%
PAL
12
0.26%
SQS/FDFT1
12
0.26%
BR6OX1/CYP85A1
12
0.26%
GGPPS
12
0.26%
DFR
11
0.24%
COR
10
0.22%
HPPR
10
0.22%
ROT3/CYP90C1
10
0.22%
DET2
9
0.2%
MPO
8
0.18%
TDC
8
0.18%
DWF1
8
0.18%
CYP80B1
7
0.15%
CHS
7
0.15%
TYDC_DDC
6
0.13%
ISY
6
0.13%
ODC
5
0.11%
SQE
5
0.11%
SMO1/SMO2
5
0.11%
MVK
5
0.11%
CMK/IspE
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CHI
4
0.09%
HYD1
4
0.09%
HMGR
4
0.09%
DXS
4
0.09%
MVD
4
0.09%
PMK
4
0.09%
HDS/IspG
4
0.09%
6OMT_4OMT_SOMT
3
0.07%
CYP719
3
0.07%
MCT/IspD
3
0.07%
HMGS
3
0.07%
HDR/IspH
3
0.07%
IDI
3
0.07%
ADC
2
0.04%
FLS
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 551 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 440 | 23 | NMT (84) | View species results |
| Phenylpropanoid pathway | 384 | 11 | POD (191) | View species results |
| Flavonoid pathway | 218 | 12 | UFGT (145) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (62) | View species results |
| Steroid pathway | 130 | 11 | CAS (59) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1643 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 321 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_sylvestris_XP_009758936.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| nicotiana_sylvestris_XP_009760666.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009763487.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009766391.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| nicotiana_sylvestris_XP_009766392.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| nicotiana_sylvestris_XP_009768416.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009768564.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009769381.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| nicotiana_sylvestris_XP_009769719.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| nicotiana_sylvestris_XP_009769720.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| nicotiana_sylvestris_XP_009771385.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009771386.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009772417.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009772418.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| nicotiana_sylvestris_XP_009772544.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| nicotiana_sylvestris_XP_009772545.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| nicotiana_sylvestris_XP_009772647.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| nicotiana_sylvestris_XP_009773000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009773607.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009773744.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009773745.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009775763.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009776711.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009776783.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009778862.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| nicotiana_sylvestris_XP_009782046.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009782884.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009783870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| nicotiana_sylvestris_XP_009787721.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009789920.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009791271.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| nicotiana_sylvestris_XP_009792012.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| nicotiana_sylvestris_XP_009793983.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009794560.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009796254.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009796255.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| nicotiana_sylvestris_XP_009796888.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| nicotiana_sylvestris_XP_009797691.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009797692.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009797693.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009797694.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009797695.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009799124.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| nicotiana_sylvestris_XP_009802753.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009802755.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| nicotiana_sylvestris_XP_009803547.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| nicotiana_sylvestris_XP_009804542.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| nicotiana_sylvestris_XP_009804543.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| nicotiana_sylvestris_XP_009804544.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |