Nicotiana sylvestris (nicotiana_sylvestris)
/
Imported from atlas release summary for Nicotiana sylvestris.
1879
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1879
Candidate Genes
C4H
5.72%
C3'H/CYP98A
5.52%
BAHD
5.48%
POD
4.31%
T3O
3.72%
UFGT
3.7%
4CL
3.7%
UGT
3.7%
Other Families
64.16%
More Families (97)
7DLGT
165
3.63%
IFS
163
3.59%
CYP76
159
3.5%
NMT
157
3.45%
F3H
131
2.88%
BR6OX2/CYP85A2
99
2.18%
F3'H/CYP75B
90
1.98%
DWF4/CYP90B1
83
1.83%
TPS
82
1.8%
STR
74
1.63%
CAS
74
1.63%
GES
73
1.61%
CYP71
73
1.61%
CODM/T6ODM
66
1.45%
H6H
61
1.34%
SMT1/SMT2/SMT3
61
1.34%
CAD
57
1.25%
SGD
52
1.14%
TRI/TRII
49
1.08%
LAC
49
1.08%
IFR
47
1.03%
TAT
46
1.01%
CSE
41
0.9%
GS
38
0.84%
SLS
38
0.84%
F5H/CYP84A
38
0.84%
RAS
37
0.81%
PYKS
36
0.79%
HCT
35
0.77%
CYP90D1
35
0.77%
NCS
29
0.64%
T16H
27
0.59%
COMT
26
0.57%
BBE
25
0.55%
CPR
25
0.55%
PMT
23
0.51%
G8O/G8H
23
0.51%
CPD/CYP90A1
23
0.51%
CCR
22
0.48%
IO
21
0.46%
FNS
20
0.44%
F3'5'H/CYP75A
20
0.44%
CYP51G1
20
0.44%
LAMT
19
0.42%
AACT
19
0.42%
7DLH
18
0.4%
16OMT
18
0.4%
CNMT
17
0.37%
ANR
17
0.37%
8HGO
15
0.33%
ANS/LDOX
15
0.33%
FPPS
15
0.33%
CCoAOMT
13
0.29%
PAL
12
0.26%
SQS/FDFT1
12
0.26%
BR6OX1/CYP85A1
12
0.26%
GGPPS
12
0.26%
DFR
11
0.24%
COR
10
0.22%
HPPR
10
0.22%
ROT3/CYP90C1
10
0.22%
DET2
9
0.2%
MPO
8
0.18%
TDC
8
0.18%
DWF1
8
0.18%
CYP80B1
7
0.15%
CHS
7
0.15%
TYDC_DDC
6
0.13%
ISY
6
0.13%
ODC
5
0.11%
SQE
5
0.11%
SMO1/SMO2
5
0.11%
MVK
5
0.11%
CMK/IspE
5
0.11%
XMT_MXMT_DXMT
4
0.09%
CHI
4
0.09%
HYD1
4
0.09%
HMGR
4
0.09%
DXS
4
0.09%
MVD
4
0.09%
PMK
4
0.09%
HDS/IspG
4
0.09%
6OMT_4OMT_SOMT
3
0.07%
CYP719
3
0.07%
MCT/IspD
3
0.07%
HMGS
3
0.07%
HDR/IspH
3
0.07%
IDI
3
0.07%
ADC
2
0.04%
FLS
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
MDS/IspF
2
0.04%
CYP80F1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 551 | 19 | BAHD (197) | View species results |
| Alkaloid pathway | 440 | 23 | NMT (84) | View species results |
| Phenylpropanoid pathway | 384 | 11 | POD (191) | View species results |
| Flavonoid pathway | 218 | 12 | UFGT (145) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (62) | View species results |
| Steroid pathway | 130 | 11 | CAS (59) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1643 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 321 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_sylvestris_XP_009789333.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| nicotiana_sylvestris_XP_009789335.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| nicotiana_sylvestris_XP_009790450.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| nicotiana_sylvestris_XP_009790619.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| nicotiana_sylvestris_XP_009790620.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| nicotiana_sylvestris_XP_009790622.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| nicotiana_sylvestris_XP_009790654.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009790655.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009790656.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009791606.1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| nicotiana_sylvestris_XP_009792684.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| nicotiana_sylvestris_XP_009792781.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| nicotiana_sylvestris_XP_009792782.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| nicotiana_sylvestris_XP_009792783.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| nicotiana_sylvestris_XP_009795073.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| nicotiana_sylvestris_XP_009795142.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| nicotiana_sylvestris_XP_009795143.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| nicotiana_sylvestris_XP_009795147.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| nicotiana_sylvestris_XP_009795148.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| nicotiana_sylvestris_XP_009795242.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| nicotiana_sylvestris_XP_009795312.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| nicotiana_sylvestris_XP_009795313.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| nicotiana_sylvestris_XP_009795936.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| nicotiana_sylvestris_XP_009796638.1 | Alkaloid | NMT | medium | pass | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| nicotiana_sylvestris_XP_009796873.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| nicotiana_sylvestris_XP_009796874.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| nicotiana_sylvestris_XP_009796919.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| nicotiana_sylvestris_XP_009796920.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| nicotiana_sylvestris_XP_009797624.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| nicotiana_sylvestris_XP_009797631.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| nicotiana_sylvestris_XP_009798600.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| nicotiana_sylvestris_XP_009798601.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| nicotiana_sylvestris_XP_009799402.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| nicotiana_sylvestris_XP_009800277.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| nicotiana_sylvestris_XP_009800535.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| nicotiana_sylvestris_XP_009801800.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| nicotiana_sylvestris_XP_009802305.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| nicotiana_sylvestris_XP_009802311.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| nicotiana_sylvestris_XP_009802312.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| nicotiana_sylvestris_XP_009802313.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| nicotiana_sylvestris_XP_009802354.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| nicotiana_sylvestris_XP_009802356.1 | Alkaloid | NMT | low | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| nicotiana_sylvestris_XP_009802433.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| nicotiana_sylvestris_XP_009802974.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| nicotiana_sylvestris_XP_009803311.1 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| nicotiana_sylvestris_XP_009803620.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009803621.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009803622.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009803623.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| nicotiana_sylvestris_XP_009803624.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |