PlantSME Plant secondary metabolism enzyme database

Oryza glumipatula (oryza_glumipatula)

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Imported from atlas release summary for Oryza glumipatula.

1592
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.77% Alkaloid pathway 23.62% Flavonoid pathway 17.4% Phenylpropanoid pathway 15.2% Rosmarinic acid pathway 8.42% Steroid pathway 5.59%
Family Distribution
C4H 6.75% C3'H/CYP98A 6.35% BAHD 5.46% UGT 5.05% 7DLGT 4.72% UFGT 4.38% T3O 3.76% CYP76 3.69%
Other Families 59.84%
More Families (97)
IFS 137 3.28% F3'H/CYP75B 119 2.85% 4CL 117 2.8% BR6OX2/CYP85A2 103 2.47% POD 94 2.25% DWF4/CYP90B1 89 2.13% NMT 82 1.96% CYP71 75 1.8% F3H 70 1.68% STR 66 1.58% SMT1/SMT2/SMT3 58 1.39% PYKS 55 1.32% CAD 55 1.32% TPS 50 1.2% G8O/G8H 49 1.17% COMT 45 1.08% CAS 45 1.08% CODM/T6ODM 44 1.05% TRI/TRII 44 1.05% GES 42 1.01% CSE 42 1.01% IFR 38 0.91% FNS 38 0.91% PMT 37 0.89% T16H 37 0.89% RAS 36 0.86% LAC 35 0.84% 16OMT 34 0.81% CHS 32 0.77% HCT 31 0.74% H6H 30 0.72% SGD 30 0.72% CCR 30 0.72% F5H/CYP84A 30 0.72% CYP90D1 29 0.69% SLS 28 0.67% ANR 28 0.67% GS 27 0.65% PAL 27 0.65% CYP51G1 27 0.65% F3'5'H/CYP75A 22 0.53% BR6OX1/CYP85A1 22 0.53% NCS 20 0.48% IO 20 0.48% BBE 18 0.43% 7DLH 16 0.38% 8HGO 15 0.36% CPD/CYP90A1 15 0.36% DFR 14 0.34% CNMT 13 0.31% COR 13 0.31% LAMT 13 0.31% ANS/LDOX 13 0.31% ROT3/CYP90C1 12 0.29% TAT 11 0.26% XMT_MXMT_DXMT 10 0.24% FPPS 10 0.24% CYP80B1 8 0.19% CYP719 8 0.19% CPR 8 0.19% TYDC_DDC 7 0.17% 6OMT_4OMT_SOMT 7 0.17% MPO 7 0.17% CYP80F1 6 0.14% SQS/FDFT1 6 0.14% GGPPS 6 0.14% ISY 5 0.12% ADC 5 0.12% CCoAOMT 5 0.12% AACT 5 0.12% MVK 5 0.12% ODC 4 0.1% HPPR 4 0.1% FK 4 0.1% SMO1/SMO2 4 0.1% MVD 4 0.1% HMGR 4 0.1% TDC 3 0.07% FLS 3 0.07% CHI 3 0.07% HYD1 3 0.07% DET2 3 0.07% DWF1 3 0.07% MCT/IspD 3 0.07% PMK 3 0.07% IDI 3 0.07% DXS 3 0.07% DXR 2 0.05% CMK/IspE 2 0.05% MDS/IspF 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% DWF7 1 0.02% DWF5 1 0.02% SQE 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 474 19 UGT (182) View species results
Alkaloid pathway 376 23 7DLGT (83) View species results
Flavonoid pathway 277 13 UFGT (170) View species results
Phenylpropanoid pathway 242 13 POD (69) View species results
Rosmarinic acid pathway 134 7 C4H (75) View species results
Steroid pathway 89 11 SMT1/SMT2/SMT3 (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1710 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 295 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
oryza_glumipatula_OGLUM01G03500.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
oryza_glumipatula_OGLUM01G41400.1 Steroid DET2 medium pass DET2__00001__sp_I1HTF7_DET2_BRADI
oryza_glumipatula_OGLUM11G04950.1 Steroid DET2 medium pass DET2__00001__sp_I1HTF7_DET2_BRADI