Oryza glumipatula (oryza_glumipatula)
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Imported from atlas release summary for Oryza glumipatula.
1592
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1592
Candidate Genes
C4H
6.75%
C3'H/CYP98A
6.35%
BAHD
5.46%
UGT
5.05%
7DLGT
4.72%
UFGT
4.38%
T3O
3.76%
CYP76
3.69%
Other Families
59.84%
More Families (97)
IFS
137
3.28%
F3'H/CYP75B
119
2.85%
4CL
117
2.8%
BR6OX2/CYP85A2
103
2.47%
POD
94
2.25%
DWF4/CYP90B1
89
2.13%
NMT
82
1.96%
CYP71
75
1.8%
F3H
70
1.68%
STR
66
1.58%
SMT1/SMT2/SMT3
58
1.39%
PYKS
55
1.32%
CAD
55
1.32%
TPS
50
1.2%
G8O/G8H
49
1.17%
COMT
45
1.08%
CAS
45
1.08%
CODM/T6ODM
44
1.05%
TRI/TRII
44
1.05%
GES
42
1.01%
CSE
42
1.01%
IFR
38
0.91%
FNS
38
0.91%
PMT
37
0.89%
T16H
37
0.89%
RAS
36
0.86%
LAC
35
0.84%
16OMT
34
0.81%
CHS
32
0.77%
HCT
31
0.74%
H6H
30
0.72%
SGD
30
0.72%
CCR
30
0.72%
F5H/CYP84A
30
0.72%
CYP90D1
29
0.69%
SLS
28
0.67%
ANR
28
0.67%
GS
27
0.65%
PAL
27
0.65%
CYP51G1
27
0.65%
F3'5'H/CYP75A
22
0.53%
BR6OX1/CYP85A1
22
0.53%
NCS
20
0.48%
IO
20
0.48%
BBE
18
0.43%
7DLH
16
0.38%
8HGO
15
0.36%
CPD/CYP90A1
15
0.36%
DFR
14
0.34%
CNMT
13
0.31%
COR
13
0.31%
LAMT
13
0.31%
ANS/LDOX
13
0.31%
ROT3/CYP90C1
12
0.29%
TAT
11
0.26%
XMT_MXMT_DXMT
10
0.24%
FPPS
10
0.24%
CYP80B1
8
0.19%
CYP719
8
0.19%
CPR
8
0.19%
TYDC_DDC
7
0.17%
6OMT_4OMT_SOMT
7
0.17%
MPO
7
0.17%
CYP80F1
6
0.14%
SQS/FDFT1
6
0.14%
GGPPS
6
0.14%
ISY
5
0.12%
ADC
5
0.12%
CCoAOMT
5
0.12%
AACT
5
0.12%
MVK
5
0.12%
ODC
4
0.1%
HPPR
4
0.1%
FK
4
0.1%
SMO1/SMO2
4
0.1%
MVD
4
0.1%
HMGR
4
0.1%
TDC
3
0.07%
FLS
3
0.07%
CHI
3
0.07%
HYD1
3
0.07%
DET2
3
0.07%
DWF1
3
0.07%
MCT/IspD
3
0.07%
PMK
3
0.07%
IDI
3
0.07%
DXS
3
0.07%
DXR
2
0.05%
CMK/IspE
2
0.05%
MDS/IspF
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
DWF7
1
0.02%
DWF5
1
0.02%
SQE
1
0.02%
CPI1
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 474 | 19 | UGT (182) | View species results |
| Alkaloid pathway | 376 | 23 | 7DLGT (83) | View species results |
| Flavonoid pathway | 277 | 13 | UFGT (170) | View species results |
| Phenylpropanoid pathway | 242 | 13 | POD (69) | View species results |
| Rosmarinic acid pathway | 134 | 7 | C4H (75) | View species results |
| Steroid pathway | 89 | 11 | SMT1/SMT2/SMT3 (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1710 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 295 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| oryza_glumipatula_OGLUM01G01560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G05480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G16110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G21030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G26020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G26030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G26060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G26480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G31610.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM01G33450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM01G40300.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM02G08220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM02G10120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM02G14130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM02G19200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM03G04140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM03G11480.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM03G27540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM03G34020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM04G03140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM04G19280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM04G30420.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM04G30750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM05G01440.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM05G01460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM05G08050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM05G15580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM06G17180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM06G19400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM06G21640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM06G22510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM06G22530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM06G22550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM06G29730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G05490.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G09490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G10440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G14290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G16280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM07G17310.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM07G17330.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM08G04210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM08G04830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM08G17040.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| oryza_glumipatula_OGLUM08G23690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM09G01590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM09G02680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM09G06550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM09G06590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| oryza_glumipatula_OGLUM09G06620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |