PlantSME Plant secondary metabolism enzyme database

Panax stipuleanatus (panax_stipuleanatus)

Imported from atlas release summary for Panax stipuleanatus.

1576
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.6% Phenylpropanoid pathway 20.24% Alkaloid pathway 19.73% Flavonoid pathway 12.06% Rosmarinic acid pathway 9.39% Steroid pathway 6.98%
Family Distribution
BAHD 6.53% C4H 5.41% C3'H/CYP98A 5.31% 4CL 4.86% POD 4.01% UGT 3.95% IFS 3.58% 7DLGT 3.53%
Other Families 62.83%
More Families (95)
UFGT 130 3.45% CYP76 125 3.32% T3O 119 3.16% NMT 92 2.44% F3H 89 2.36% BBE 76 2.02% F3'H/CYP75B 76 2.02% DWF4/CYP90B1 76 2.02% CAD 64 1.7% STR 63 1.67% CAS 61 1.62% CYP71 56 1.49% BR6OX2/CYP85A2 55 1.46% CODM/T6ODM 53 1.41% SMT1/SMT2/SMT3 43 1.14% TRI/TRII 41 1.09% CYP90D1 41 1.09% LAC 39 1.03% CSE 39 1.03% TPS 39 1.03% HCT 38 1.01% H6H 37 0.98% TAT 37 0.98% GES 36 0.96% GS 36 0.96% PYKS 34 0.9% IFR 33 0.88% T16H 31 0.82% CPD/CYP90A1 31 0.82% PAL 30 0.8% F5H/CYP84A 28 0.74% RAS 28 0.74% IO 27 0.72% 7DLH 25 0.66% COMT 25 0.66% SLS 23 0.61% PMT 21 0.56% CCR 21 0.56% NCS 20 0.53% CYP51G1 20 0.53% ANR 19 0.5% CPR 19 0.5% F3'5'H/CYP75A 18 0.48% SGD 16 0.42% SQE 16 0.42% LAMT 15 0.4% G8O/G8H 15 0.4% 16OMT 15 0.4% FNS 14 0.37% COR 13 0.34% 8HGO 13 0.34% DFR 13 0.34% GGPPS 13 0.34% BR6OX1/CYP85A1 12 0.32% FPPS 12 0.32% DXS 12 0.32% ROT3/CYP90C1 10 0.27% CHS 9 0.24% CCoAOMT 9 0.24% MVK 9 0.24% MPO 8 0.21% CYP719 8 0.21% SQS/FDFT1 8 0.21% HMGR 8 0.21% TDC 7 0.19% ISY 7 0.19% AACT 7 0.19% CYP80B1 6 0.16% ANS/LDOX 6 0.16% DET2 6 0.16% HPPR 5 0.13% MDS/IspF 5 0.13% ADC 4 0.11% CNMT 4 0.11% CHI 4 0.11% SMO1/SMO2 4 0.11% MVD 4 0.11% HMGS 4 0.11% PMK 4 0.11% TYDC_DDC 3 0.08% HYD1 3 0.08% HDS/IspG 3 0.08% HDR/IspH 3 0.08% DXR 3 0.08% DWF7 2 0.05% MCT/IspD 2 0.05% IDI 2 0.05% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03% 6OMT_4OMT_SOMT 1 0.03% CPI1 1 0.03% DWF1 1 0.03% FK 1 0.03% DWF5 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 498 19 BAHD (201) View species results
Phenylpropanoid pathway 319 11 POD (131) View species results
Alkaloid pathway 311 20 7DLGT (52) View species results
Flavonoid pathway 190 11 UFGT (116) View species results
Rosmarinic acid pathway 148 7 C4H (50) View species results
Steroid pathway 110 13 CAS (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 312 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
panax_stipuleanatus_GWHPBEIJ000016.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ010862.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ011881.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ014913.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
panax_stipuleanatus_GWHPBEIJ016279.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
panax_stipuleanatus_GWHPBEIJ020225.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ021716.1 Terpenoid GGPPS low borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
panax_stipuleanatus_GWHPBEIJ025539.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
panax_stipuleanatus_GWHPBEIJ025807.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ026970.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ029190.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
panax_stipuleanatus_GWHPBEIJ032437.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
panax_stipuleanatus_GWHPBEIJ033587.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH