PlantSME Plant secondary metabolism enzyme database

Phaseolus acutifolius (phaseolus_acutifolius)

Imported from atlas release summary for Phaseolus acutifolius.

2348
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.04% Alkaloid pathway 26.62% Phenylpropanoid pathway 19.25% Flavonoid pathway 12.35% Steroid pathway 7.79% Rosmarinic acid pathway 6.94%
Family Distribution
BAHD 6.14% 4CL 5.01% C3'H/CYP98A 5.01% C4H 4.7% POD 3.78% NMT 3.71% UFGT 3.63% UGT 3.54%
Other Families 64.48%
More Families (97)
7DLGT 188 3.41% IFS 181 3.29% F3H 167 3.03% CYP76 167 3.03% T3O 158 2.87% STR 118 2.14% CAS 115 2.09% DWF4/CYP90B1 113 2.05% CAD 109 1.98% F3'H/CYP75B 97 1.76% CODM/T6ODM 93 1.69% SGD 92 1.67% SMT1/SMT2/SMT3 92 1.67% H6H 89 1.62% CYP71 76 1.38% TRI/TRII 71 1.29% IFR 66 1.2% BR6OX2/CYP85A2 64 1.16% TPS 58 1.05% GES 57 1.04% LAC 54 0.98% CYP90D1 54 0.98% CSE 53 0.96% ANR 51 0.93% RAS 50 0.91% IO 45 0.82% GS 44 0.8% COMT 44 0.8% BBE 40 0.73% 7DLH 40 0.73% CCR 37 0.67% PYKS 36 0.65% PMT 35 0.64% HCT 35 0.64% F3'5'H/CYP75A 33 0.6% T16H 31 0.56% 8HGO 28 0.51% CNMT 27 0.49% COR 27 0.49% SLS 26 0.47% F5H/CYP84A 26 0.47% NCS 25 0.45% ROT3/CYP90C1 25 0.45% MPO 24 0.44% CYP51G1 24 0.44% 16OMT 23 0.42% BR6OX1/CYP85A1 22 0.4% FNS 21 0.38% LAMT 19 0.35% G8O/G8H 19 0.35% DFR 19 0.35% PAL 18 0.33% CPD/CYP90A1 18 0.33% AACT 18 0.33% SQE 17 0.31% MVD 17 0.31% CHS 15 0.27% TAT 15 0.27% CCoAOMT 14 0.25% CPR 14 0.25% ANS/LDOX 13 0.24% SQS/FDFT1 13 0.24% DXS 12 0.22% CHI 10 0.18% HPPR 10 0.18% FPPS 10 0.18% TYDC_DDC 9 0.16% HMGS 9 0.16% HMGR 9 0.16% TDC 8 0.15% CYP719 8 0.15% DET2 8 0.15% ISY 7 0.13% CYP80B1 7 0.13% GGPPS 7 0.13% SMO1/SMO2 6 0.11% MVK 6 0.11% PMK 4 0.07% MCT/IspD 4 0.07% DXR 4 0.07% XMT_MXMT_DXMT 3 0.05% FLS 3 0.05% DWF7 3 0.05% FK 3 0.05% CPI1 3 0.05% 6OMT_4OMT_SOMT 2 0.04% ODC 2 0.04% DWF1 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% CYP80F1 1 0.02% ADC 1 0.02% HYD1 1 0.02% DWF5 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 635 19 BAHD (270) View species results
Alkaloid pathway 625 20 NMT (136) View species results
Phenylpropanoid pathway 452 11 POD (195) View species results
Flavonoid pathway 290 12 UFGT (185) View species results
Steroid pathway 183 12 CAS (89) View species results
Rosmarinic acid pathway 163 7 C4H (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1770 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
Pacu03G0026560.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
Pacu03G0026560.2 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
Pacu04G0000440.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Pacu04G0000450.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Pacu05G0011570.1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Pacu05G0018460.1 Alkaloid CYP719 medium borderline CYP719__00010__sp_Q50LH4_C7193_ESCCA
Pacu05G0018460.3 Alkaloid CYP719 medium borderline CYP719__00010__sp_Q50LH4_C7193_ESCCA
Pacu10G0012280.1 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE