Phaseolus acutifolius (phaseolus_acutifolius)
Imported from atlas release summary for Phaseolus acutifolius.
2348
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2348
Candidate Genes
BAHD
6.14%
4CL
5.01%
C3'H/CYP98A
5.01%
C4H
4.7%
POD
3.78%
NMT
3.71%
UFGT
3.63%
UGT
3.54%
Other Families
64.48%
More Families (97)
7DLGT
188
3.41%
IFS
181
3.29%
F3H
167
3.03%
CYP76
167
3.03%
T3O
158
2.87%
STR
118
2.14%
CAS
115
2.09%
DWF4/CYP90B1
113
2.05%
CAD
109
1.98%
F3'H/CYP75B
97
1.76%
CODM/T6ODM
93
1.69%
SGD
92
1.67%
SMT1/SMT2/SMT3
92
1.67%
H6H
89
1.62%
CYP71
76
1.38%
TRI/TRII
71
1.29%
IFR
66
1.2%
BR6OX2/CYP85A2
64
1.16%
TPS
58
1.05%
GES
57
1.04%
LAC
54
0.98%
CYP90D1
54
0.98%
CSE
53
0.96%
ANR
51
0.93%
RAS
50
0.91%
IO
45
0.82%
GS
44
0.8%
COMT
44
0.8%
BBE
40
0.73%
7DLH
40
0.73%
CCR
37
0.67%
PYKS
36
0.65%
PMT
35
0.64%
HCT
35
0.64%
F3'5'H/CYP75A
33
0.6%
T16H
31
0.56%
8HGO
28
0.51%
CNMT
27
0.49%
COR
27
0.49%
SLS
26
0.47%
F5H/CYP84A
26
0.47%
NCS
25
0.45%
ROT3/CYP90C1
25
0.45%
MPO
24
0.44%
CYP51G1
24
0.44%
16OMT
23
0.42%
BR6OX1/CYP85A1
22
0.4%
FNS
21
0.38%
LAMT
19
0.35%
G8O/G8H
19
0.35%
DFR
19
0.35%
PAL
18
0.33%
CPD/CYP90A1
18
0.33%
AACT
18
0.33%
SQE
17
0.31%
MVD
17
0.31%
CHS
15
0.27%
TAT
15
0.27%
CCoAOMT
14
0.25%
CPR
14
0.25%
ANS/LDOX
13
0.24%
SQS/FDFT1
13
0.24%
DXS
12
0.22%
CHI
10
0.18%
HPPR
10
0.18%
FPPS
10
0.18%
TYDC_DDC
9
0.16%
HMGS
9
0.16%
HMGR
9
0.16%
TDC
8
0.15%
CYP719
8
0.15%
DET2
8
0.15%
ISY
7
0.13%
CYP80B1
7
0.13%
GGPPS
7
0.13%
SMO1/SMO2
6
0.11%
MVK
6
0.11%
PMK
4
0.07%
MCT/IspD
4
0.07%
DXR
4
0.07%
XMT_MXMT_DXMT
3
0.05%
FLS
3
0.05%
DWF7
3
0.05%
FK
3
0.05%
CPI1
3
0.05%
6OMT_4OMT_SOMT
2
0.04%
ODC
2
0.04%
DWF1
2
0.04%
MDS/IspF
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
ADC
1
0.02%
HYD1
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 635 | 19 | BAHD (270) | View species results |
| Alkaloid pathway | 625 | 20 | NMT (136) | View species results |
| Phenylpropanoid pathway | 452 | 11 | POD (195) | View species results |
| Flavonoid pathway | 290 | 12 | UFGT (185) | View species results |
| Steroid pathway | 183 | 12 | CAS (89) | View species results |
| Rosmarinic acid pathway | 163 | 7 | C4H (64) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1770 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 423 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pacu01G0005470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0005470.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0005470.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0005480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0005480.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0012590.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pacu01G0012600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pacu01G0013140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0013140.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0013140.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0013170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0013170.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0013190.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016760.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016760.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016770.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016900.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0016940.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0017550.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0019250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0019260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0019270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0020400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0020400.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0020400.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu01G0020400.4 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0012220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0014350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0020700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0020710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0020730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0020740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0026900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0032720.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu02G0032720.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0002390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0013940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0013950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0018380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0018380.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0018380.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0018380.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pacu03G0028780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |