PlantSME Plant secondary metabolism enzyme database

Phaseolus lunatus (phaseolus_lunatus)

Imported from atlas release summary for Phaseolus lunatus.

2021
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.21% Alkaloid pathway 22.56% Phenylpropanoid pathway 20.78% Flavonoid pathway 14.75% Rosmarinic acid pathway 8.41% Steroid pathway 6.28%
Family Distribution
C3'H/CYP98A 5.78% C4H 5.65% BAHD 5.54% UGT 4.61% UFGT 4.3% 7DLGT 4.19% POD 3.49% CYP76 3.36%
Other Families 63.08%
More Families (97)
IFS 158 3.34% 4CL 150 3.17% T3O 147 3.11% F3H 131 2.77% NMT 111 2.35% DWF4/CYP90B1 104 2.2% F3'H/CYP75B 99 2.09% STR 91 1.93% CODM/T6ODM 80 1.69% H6H 74 1.57% SGD 73 1.54% BR6OX2/CYP85A2 73 1.54% SMT1/SMT2/SMT3 73 1.54% CYP71 73 1.54% PAL 69 1.46% CAD 68 1.44% TRI/TRII 67 1.42% CAS 61 1.29% COMT 55 1.16% CSE 48 1.02% LAC 45 0.95% T16H 44 0.93% IFR 44 0.93% HCT 44 0.93% CYP90D1 41 0.87% 16OMT 40 0.85% PYKS 39 0.83% TPS 39 0.83% GES 37 0.78% 7DLH 37 0.78% BBE 34 0.72% ANR 34 0.72% RAS 34 0.72% G8O/G8H 31 0.66% FNS 31 0.66% GS 30 0.63% F5H/CYP84A 29 0.61% F3'5'H/CYP75A 27 0.57% CYP51G1 25 0.53% CCR 24 0.51% IO 23 0.49% PMT 23 0.49% ANS/LDOX 21 0.44% BR6OX1/CYP85A1 21 0.44% CHS 19 0.4% CYP80B1 17 0.36% COR 17 0.36% SLS 16 0.34% MPO 16 0.34% CNMT 15 0.32% CCoAOMT 15 0.32% TAT 15 0.32% CPD/CYP90A1 15 0.32% LAMT 14 0.3% 8HGO 14 0.3% NCS 14 0.3% GGPPS 14 0.3% DFR 11 0.23% CPR 11 0.23% SQE 10 0.21% SQS/FDFT1 10 0.21% DXS 10 0.21% CYP719 9 0.19% ISY 9 0.19% CHI 9 0.19% ROT3/CYP90C1 8 0.17% HPPR 7 0.15% DET2 7 0.15% HMGS 7 0.15% AACT 6 0.13% SMO1/SMO2 5 0.11% CPI1 5 0.11% HMGR 5 0.11% MVK 4 0.08% FPPS 4 0.08% MVD 4 0.08% TDC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% PMK 3 0.06% TYDC_DDC 2 0.04% CYP80F1 2 0.04% XMT_MXMT_DXMT 2 0.04% DWF5 2 0.04% DWF1 2 0.04% HDR/IspH 2 0.04% ADC 1 0.02% ODC 1 0.02% FLS 1 0.02% DWF7 1 0.02% HYD1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 550 18 BAHD (212) View species results
Alkaloid pathway 456 21 7DLGT (87) View species results
Phenylpropanoid pathway 420 11 POD (159) View species results
Flavonoid pathway 298 9 UFGT (192) View species results
Rosmarinic acid pathway 170 7 C4H (73) View species results
Steroid pathway 127 11 CAS (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1698 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
Reset
Gene Pathway Family Confidence Status Best Target
Plun03G0002270.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun03G0031200.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun04G0005870.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun04G0036850.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun05G0018450.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun08G0035180.5 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun08G0035230.4 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun08G0036270.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Plun09G0034940.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Plun09G0035000.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Plun11G0002200.1 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
Plun11G0032760.1 Alkaloid NCS low borderline NCS__00005__sp_Q67A25_NCS_THLFG
Plun11G0032780.1 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
Plun11G0032910.1 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG